Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03136 ATGAGATTAAGGTCCAAAAGCTTCTCCTTTTTTCTCTTCTCGTCGCTGCCCGACATCACCGACTTCCACCACAACCATGTCTTCTCTTCATTTCAACCTCCATCCACTCCTTCCATCTTCATCTCCACTACTCACCACCACCAACAACATTTCTTCCTTCTCCCCCACTTCCCTCTCCATCTTCTACAACAACCACCACCACCTTCTTCGCTTCAATCTCATCGGGATTTGAAGCCGCAAAATTTGCTTCTCGATCAACAGCAAGGGATTTTGAAGATTGCTGATCTTGGTCTTGGGAGGGCTTTTACCGTCCCGCTTAAGAGTTATACTCATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTTTTGCTTGGATCTACTACCTACTCTACTAGAGTTGATATCTGGTCTGTTGGATGTATCTTTGCTGAAATGGGTAATACGGAGAAGTCCAGAATAATTATGGTCGGTGATACTTTGAAGAAAGCTGGTGATTCATCTCAGAATAGTCTTGTTAAAGACATCAAACAGAACAACACCGAAAGCTTAATCCCGCTAGCAGTTCCTGCCGTCGTTCATAGCGCCGGCGTGCTTCTCCGTCAACCTTCTGTTCCACTCCTATGCCGCTCTGTTGCGGTGCTACTTTTATGTTTGCTGTCTGTAAGACGTCTGCTTTCGTATCCATCAGGTCAGGTGTTCATCATGCCGGTTTGTGACAGAAATCGGGTTCCTGGAACTAGAGAGAGGATGGAGATGGAGAGGAAAGAGAGGGTAAGAAAAGCTGAGGCGTTGGTTGAGAAAGCAATGAAAGGGAATGATGCTTCTCACGATGCAGTGCATGTTTGGAGGGTTCGTGACCTTGCTCTCTCCCTTGCCTCTGAGGAAGGCCTCTCTTCTGATCCACACTCCATGGAAATCTTACAGCTGGCACCTGTTTTCTTTACTTTCTCGCTTGGAACGAAAATGCACTATTTTGGGCGCACTCTCCTGCATGGAGGGGCAAAGTACAGAGCAACTGGGCATGGATTTGTCGTTCGTCATGAAAAGTTTGCAGACAATTACAGGATGTACTCTAGGAGTCATTTTGTGTGA 1095 0.4621 MRLRSKSFSFFLFSSLPDITDFHHNHVFSSFQPPSTPSIFISTTHHHQQHFFLLPHFPLHLLQQPPPPSSLQSHRDLKPQNLLLDQQQGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTTYSTRVDIWSVGCIFAEMGNTEKSRIIMVGDTLKKAGDSSQNSLVKDIKQNNTESLIPLAVPAVVHSAGVLLRQPSVPLLCRSVAVLLLCLLSVRRLLSYPSGQVFIMPVCDRNRVPGTRERMEMERKERVRKAEALVEKAMKGNDASHDAVHVWRVRDLALSLASEEGLSSDPHSMEILQLAPVFFTFSLGTKMHYFGRTLLHGGAKYRATGHGFVVRHEKFADNYRMYSRSHFV 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03136 364 Pfam Protein kinase domain 74 149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03136 364 ProSiteProfiles Protein kinase domain profile. 1 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03136 364 Gene3D - 254 316 - -
Vifa2g03136 364 SUPERFAMILY HD-domain/PDEase-like 255 311 - -
Vifa2g03136 364 Pfam 1,3-beta-glucan synthase component 306 364 IPR003440 GO:0000148|GO:0003843|GO:0006075|GO:0016020
Vifa2g03136 364 SUPERFAMILY Protein kinase-like (PK-like) 74 148 IPR011009 -
Vifa2g03136 364 SMART serkin_6 1 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03136 364 PANTHER CELL DIVISION PROTEIN KINASE 74 159 - -
Vifa2g03136 364 Gene3D Transferase(Phosphotransferase) domain 1 74 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03136 Vifa-Chr2 901196092 901200881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03136 74 146 Core Cell Cycle Gene Families AT2G38620 90.411 1.14e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vifa2g03136 Pkinase 5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03136 K07760 - rcu:8283032 143.28