Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03130 ATGTATTGGGTTTCCCAAAATCCTCCACCTGCACATCTCTTTCTGATATCTGGTGATAGAGACTTTGCTGGCATATTGCACCGGTTAAGAATGAATAACTATAATATCTTGCTTGCAAGTCCTGGAAAGGCTCCTGATGTTCTCCTCAGTGCAGCAACTATAATGTGGCAGTGGTCATCTTTGCTCAAGGGAGAAGATCTAACTGGAAAACATTTCAACCACCCTCCCGATGGTCAGTTTGGTTCTTGGTATGGAAACTCTAAAGTGTCTCTTGAAAACCCCTTTTCTGCTGCTGAGCAGTCAACATCTTCACAAAATATACAAGTCACGGAATTCAATGAACCCTCCTTTGACTTAAAGGTAGGTGGAGGAGTTCCAAAGTCAGTTATAAGGCGGATTAAGGATATATTGAGTTTACATCCAAAAGGCATTGGCATTTCAGAACTTCGTGCAGAGCTAACAAAACATGACGTGTCTTTGGGTAAAAGCATATTTGGATATAAAAGGCTTTCTCGCTTTCTATCATCACTACCAAATGTACAACTCCGGCATTTAAGAGATGGTAATTATTGTGTGTATTTGATCCCCTCAGGATACCATGAACCTTCTGAAAGCAGCAGTACTTTATCAACGGTATCTTCTGTTAAGAATGAGGAGATGGGCTGTACAACAACTCCAAAGCTACACAGTGAAGATAAAGACATAAATAGAGACTTGCATAAGACTCTCCCAATGTCTTCATTGGATGAAAAGATCATTGGGGATGATTCAAAATCATTCCAATCTACCCCTTTACAAGGAATACATATCGAGGAAGACGGGTCGCGTAAATCACTCCAATCTATCCCTTCACAAGGAAAGCCTATTGAAGAAGATGTGTCACGTAAATCATCTATAGGCAGTGAGAAGGTTCTGGATGTGTCTAATGCACAATTGTCAGAGAGTCATCTTTCATCAAAGGACAATGATGTTTACAAAACTGATATTGGTTCCTTTAAATCTATAAAGTTTTCTGATGATGAAGTTGTTAGGTCTGAGGATGTAAGTCCAAAAGTTCTTGAAAAATATACCAGTTCAGGGAATCCCTCTACTGGTATTGATCACACAATGATGGAAAACAATGTAGTAAATTGTGAATCTGGAAAATCTATAGCAAAGAACAAACACGAGAATCAACCTAGAAAGGAGGTCGATGATTACAGCCCATATTCTTCAGCCATTGGTGACTCTCTGGTTGACAAAAGACCCGATGTTCATGCTGAAACTTACAGCAAAAGGTCAACATTCTTTAATTGGATTAAAAGTTGGTTGCCATTTCAGAAAAGCAATGTAAAGGCTGATGATTCTACTGCTAATCAGAACAAGGTGACTAGTAATTTTGAGGATTCTAATTTATCCGAACTAGACCAGACTGCTTGTAATCTTGAAGAACCTAAGCCATTAGAACAACAGCAGTATGTTAGTAATTCTGGAAAGCATGAGGATTCCAAGTTACCTGAACTAGACCAGACTGCTAGTATTCTTGAAAAGGCTAAGCCATTAGAACCACACCAGGATGTCAGTCATTCTGGAAAGCCTGAGTTATTTTCTAGTGGTTCCTTTTGGAATGACATGGAATCTTTTGTTTTCACCCCCAAAGGATCACTTCTTATTTCCCAGTCTAGAAGCAGGGAGGATTTGGCTCATAAACTACAAAAGCATGGACCCGTGGTTCTTAAATCTTTTGCTGAAAACGATATCTTTCAATTGGTGGAACTGTTGATAGCAGAAAAAAAATGGTTGGAGGAGAGCCCCTCTCATACATTTCCTTTTAGGCTAACTCAATCAGTTCTGAAGAGCACGCCGATGGGCCAGTCTAATGGTACAAGTGGTTTGAGATCTCTGTTTCTTAGTAGAACATCGCAGTCCAACTCGCAAAAGTCATTTGAACATGAAGGGAAGAAACACTCTCAGAGTACTCAGCAAACAGAAGTTTCCAAACCTGCCACTGAAACAAAATATACTGAGAAGTCTAGAAATGATATATTACAAGATTGTCAGAAACTGGTAACTGATGTATTGAAGGAACACCCAGAGGGATATAACTTAAGTTGTTTTCGAAAACAATTTACTGATAGATATGGCTATGACCTTGACATCGAAAAGCTTGGTTATCAGAAGCTGTCATACCTGATACAAATAATGTCCGGGGTTAAGTTTGGATCCCCTTACATTTACCCTTCTACACCTGCTGTTTGTGCTTCTGACTCGGACACTTCTATCCTCAAAACTCGAGCAACCAATGCTAGTCATGAAAAATTCAACTCATATAATGAGTTATCTGATACAGCCCCCAAAGAGTATACCACGGAATCTCCTTGGGAGGAATTAGGTCCTATTTCTCTTAAAAGTTCTAGTCAGAATGATCAGGAATCAAATTTAACTCAAGAAGTCATCGGACTGAATACACCAAAGTATCCTGATTACGAACCCATTGTCTCAGATTATGATTTGTCTGAATCTGAAGGAGAAAACTCTTGTTCAACTCAATCAGAAGATCAAGTAAAGCCAAAATATGATGAGCAAGACAGTTCTTTTTGGCAAGCTCTGGATTCCTGGCATAGCAGCAAGGAAGAAGAGAGTAGTGTCAAGAAATCCAAAAACATTGATGTCTTAGGCAATTCTCTGCTTGACATCTTAAATTCAGCCCCAGACTCGAAACAGGGTATCGACGGTATTGTTTCCAACAAAGAAAAGCAAAGATCTCATAAGTATTCATTTGTTGTTGACCCAGCCTCACCTGACAAAGACAAGTTTATTGGTGGGATATTAGATGGTTTGAAGAAAGAGGATGAGCCCAAGATGCATCATAACTGA 2856 0.3936 MYWVSQNPPPAHLFLISGDRDFAGILHRLRMNNYNILLASPGKAPDVLLSAATIMWQWSSLLKGEDLTGKHFNHPPDGQFGSWYGNSKVSLENPFSAAEQSTSSQNIQVTEFNEPSFDLKVGGGVPKSVIRRIKDILSLHPKGIGISELRAELTKHDVSLGKSIFGYKRLSRFLSSLPNVQLRHLRDGNYCVYLIPSGYHEPSESSSTLSTVSSVKNEEMGCTTTPKLHSEDKDINRDLHKTLPMSSLDEKIIGDDSKSFQSTPLQGIHIEEDGSRKSLQSIPSQGKPIEEDVSRKSSIGSEKVLDVSNAQLSESHLSSKDNDVYKTDIGSFKSIKFSDDEVVRSEDVSPKVLEKYTSSGNPSTGIDHTMMENNVVNCESGKSIAKNKHENQPRKEVDDYSPYSSAIGDSLVDKRPDVHAETYSKRSTFFNWIKSWLPFQKSNVKADDSTANQNKVTSNFEDSNLSELDQTACNLEEPKPLEQQQYVSNSGKHEDSKLPELDQTASILEKAKPLEPHQDVSHSGKPELFSSGSFWNDMESFVFTPKGSLLISQSRSREDLAHKLQKHGPVVLKSFAENDIFQLVELLIAEKKWLEESPSHTFPFRLTQSVLKSTPMGQSNGTSGLRSLFLSRTSQSNSQKSFEHEGKKHSQSTQQTEVSKPATETKYTEKSRNDILQDCQKLVTDVLKEHPEGYNLSCFRKQFTDRYGYDLDIEKLGYQKLSYLIQIMSGVKFGSPYIYPSTPAVCASDSDTSILKTRATNASHEKFNSYNELSDTAPKEYTTESPWEELGPISLKSSSQNDQESNLTQEVIGLNTPKYPDYEPIVSDYDLSESEGENSCSTQSEDQVKPKYDEQDSSFWQALDSWHSSKEEESSVKKSKNIDVLGNSLLDILNSAPDSKQGIDGIVSNKEKQRSHKYSFVVDPASPDKDKFIGGILDGLKKEDEPKMHHN 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03130 951 MobiDBLite consensus disorder prediction 830 854 - -
Vifa2g03130 951 MobiDBLite consensus disorder prediction 385 410 - -
Vifa2g03130 951 PANTHER LIMKAIN B LKAP 1 684 IPR024768 GO:0005777|GO:0010468
Vifa2g03130 951 MobiDBLite consensus disorder prediction 477 492 - -
Vifa2g03130 951 Pfam NYN domain 1 52 IPR021139 GO:0004540
Vifa2g03130 951 Pfam OST-HTH/LOTUS domain 128 190 IPR025605 -
Vifa2g03130 951 Pfam OST-HTH/LOTUS domain 676 729 IPR025605 -
Vifa2g03130 951 MobiDBLite consensus disorder prediction 774 805 - -
Vifa2g03130 951 MobiDBLite consensus disorder prediction 444 463 - -
Vifa2g03130 951 MobiDBLite consensus disorder prediction 477 499 - -
Vifa2g03130 951 CDD LOTUS 676 731 - -
Vifa2g03130 951 ProSiteProfiles OST-type HTH domain profile. 125 196 IPR025605 -
Vifa2g03130 951 MobiDBLite consensus disorder prediction 267 300 - -
Vifa2g03130 951 Gene3D - 670 733 IPR041966 -
Vifa2g03130 951 Gene3D - 125 201 IPR041966 -
Vifa2g03130 951 ProSiteProfiles OST-type HTH domain profile. 675 749 IPR025605 -
Vifa2g03130 951 MobiDBLite consensus disorder prediction 832 846 - -
Vifa2g03130 951 MobiDBLite consensus disorder prediction 639 669 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03130 1 64 C2H2 Transcription Factor Family AT5G61190 53.125 9.91e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03130 - - tpra:123916554 1279.62