Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03128 ATGGATTTGGACGATTTCCGATCCATATTAGACACGGCGGGCGTTGACGTGTGGTTGTTCATCGACACCGCGATCTCCGTCGCGTCTCTGGATAACGCCGGCGAGTTAAAGCAGCGAAGAGACGGAATCGTTGAGCGTCTTTACGCCGCCACCACTGCTCCCCCGCTTTGTCAGAATTGTGAAGGCGGAGGAAGCCTTTTGACTGACGGTAACCAAATCAGGAAACAGAGTAACCCTAGTTTAAGCCCTGAGCAAAATCAGCGCCGCGGCGGTGGCTCTTCTCCTCCGACGCCGCAGTCGCAAGGAAACGAGGATGATGAAGATGATGAGATAGATCCTTACGGTGGTTTGTTCGAGGATGAACAGAAGAAGATTCTAGAAATTAAAGAGTTACTTGAAGATCCTAGACAGTCTGAAGATTCTTTGTTAGAGTTGCTGCAAAATCTGGTGGATATTGATATTACATTCCAAGAGTTGAAGGAGACTGACATTGGGAGGAATGTGAATCAGTTAAGGAAACATCCATCCAGCGATGTTCGCCGATTGGTGAAGTTACTTGTCAAGAAGTGGAAAGAAATTGTTGATGAATGGGTGAAGTTGAATCCACAAGGAGGAAAAAACACTGTCATGGCTGATGGAGACTCTCCTTTGCAGAAAACCACCCCAAATGGGCATTATCATCAGATTCCTGATTTTGCGTACTCACCAAATCCACAGAATGGAAGCTCTGGTTCTGACCGCAACACCTCTGAACTGGAAACGAAACCTAAACAAAAACCGATTCTTCCTCGCAAAGAACCACCTCCGAAACTAAGGCCATCACCGCCAGTTACCGCTCCCGCTACTCAAAATAGACAGAGAGAACAAAGAGAGAACAATTTTGATGCTGAGAGGCTTGCATCTGCGAGAAAACGGCTTCAAGAGAACTATAAAGAGGCTGAAAATGCCAAAAAGCAAAGAACTATTCAGGTAATGGACATACATGAGTTACCTAAATCAAAAAAGAATGGTTTCTTTCCAAAGAACAGAGGTGGTGGCAGTTCTCACGGAAGGCAGCATTGGTGA 1065 0.4601 MDLDDFRSILDTAGVDVWLFIDTAISVASLDNAGELKQRRDGIVERLYAATTAPPLCQNCEGGGSLLTDGNQIRKQSNPSLSPEQNQRRGGGSSPPTPQSQGNEDDEDDEIDPYGGLFEDEQKKILEIKELLEDPRQSEDSLLELLQNLVDIDITFQELKETDIGRNVNQLRKHPSSDVRRLVKLLVKKWKEIVDEWVKLNPQGGKNTVMADGDSPLQKTTPNGHYHQIPDFAYSPNPQNGSSGSDRNTSELETKPKQKPILPRKEPPPKLRPSPPVTAPATQNRQREQRENNFDAERLASARKRLQENYKEAENAKKQRTIQVMDIHELPKSKKNGFFPKNRGGGSSHGRQHW 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03128 354 MobiDBLite consensus disorder prediction 250 266 - -
Vifa2g03128 354 MobiDBLite consensus disorder prediction 233 249 - -
Vifa2g03128 354 MobiDBLite consensus disorder prediction 67 101 - -
Vifa2g03128 354 MobiDBLite consensus disorder prediction 202 354 - -
Vifa2g03128 354 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 354 IPR044790 -
Vifa2g03128 354 MobiDBLite consensus disorder prediction 288 336 - -
Vifa2g03128 354 MobiDBLite consensus disorder prediction 67 115 - -
Vifa2g03128 354 Pfam TFIIS helical bundle-like domain 145 194 IPR017923 -
Vifa2g03128 354 CDD TFIIS_I 122 195 - -
Vifa2g03128 354 ProSiteProfiles TFIIS N-terminal domain profile. 120 197 IPR017923 -
Vifa2g03128 354 SMART TFS2_5 125 196 IPR003617 GO:0005634
Vifa2g03128 354 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 123 207 IPR035441 -
Vifa2g03128 354 Coils Coil 296 323 - -
Vifa2g03128 354 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 118 206 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03128 Vifa-Chr2 899359725 899361608 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vifa2g03128 Med26 5.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03128 - - aip:107622503 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03128 2 899359725 899361608 Vifa2g03128 2 899359725 899361608 ECH
Vifa2g03128 2 899359725 899361608 Vifa2g03128 2 899359725 899361608 PCT