Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa2g03119 | ATGGATTTCGACGAGTACGATTATCTGGAGAAGACAGTGGAGGAGGAGATAGATGAGAAAGATTCTTCTAAGAAGGGGAGGGAGAGTATCGACAGGACCGAACGGAGCTACAGAAAGCGCGATGAGATCGAAGATGGCGCCGAATTGAAGAGGAGTAAGAGGTCCAGCGGTGACGACGATGAGCATGTCTCCAGGAAGGATAGAGATCGGGACGATGACCGCGACAAGGAGCGTCGTAGGAGTGGCAGGGATAGGGATAGGGACAGAGACGGTGAGAGGAGTAGCAGAGACCGAGGCCGAGACAGGGAGAAGGATGTGGATAGGGAGAAAGATAGGAGAGACAAGGATAGAGAAAGGGAAAGGAGGGAGAGGGAGAAGGAGAAGGAAAAGGAGAGAGAAAGGTCCAGGAGGAGCAAGAGTCGTTCTGAGCGGGAAAGAGAGATAGAACGGGAGGAGAGGGAGAGGTCTCGGAGAAGCGTAAGTCGTTCTGAACGTGATAGAGAGAAGGAACGGGAGGAGAGAGACAGGTCCAGGAGGAGCAGAAGTCGCTCTGAGCGTGATAGCATCAGAGAACGAGATTTCGACATGAGAGATAGCCGGAGACTTAGGGAGAAGAAGGAAGCTGTGGAGCCTGAGGCAGATCCAGAGAGGGATCAAAGAACTGTTTTTGCCTATCAGATGCCCTTAAAGGCAACAGAACGAGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTTCGACTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGCAATGCGATAATGATGAGGGATGATGGGAATACCTTGCACACATGTTTATTCAATTCATGCTGCGTACTCAAGTTTATATCACTTGAACTGATTATGAGGTATATTGAATTTTATGATGCAATGTCGGTGCCGATGGCAATTGCTCTCTCTGGTCAACTTCTTCTTGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTAGTTCAATCTAATACTACTACTGGAGCTGCTGGTGTGGTCGGACCATATGGAGCCGTGGACAGAAAACTGTATGTGGGGAACCTTCATTTCAATATGACCGAGAGCCAGTTGAGAGAGATTTTTGAGCCATTTGGTACTGTGGAGGTTGTGCAACTGCCTCTTGACCTGGAGACAGGACATTGCAAGGGTTTTGGATTTATTCAATTTGCCCACCTAGAACATGCAAAGGCTGCCCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCAGAACTATCAAGGTTTCATCTGTAGCAGACCATGTTGGAGGCCAAGATACAACAGCAAAATCTGCAGATTTTGATGATGATGAAGGCGGATTGGCTTTAAATGCCCAATCAAGAGCGTTGCTTATGCAGAAGTTGGATCGCTCTGGAATTGCTGCAAGCATTGGCTTACCCATTAATGGGTCAGTTCCCGCCCAGCAGGCTATTAGTTTGCCTATTGGTAATCCTGGATTAATGCCAGCACTAGCTCTACCAACTCAATTTATGCCTACTCAAATGGCTGAACCTGTCGGAACCCCCAGCAACTGCTTGCTGTTGAAGAATATGTTTGATCCATCAACTGAGACAGAACCAGATTTTGATCTAGACATCAAAGAAGATGTAGAAGAAGAGTGTTCTAAATATGGGCGGGTGAAGCATATCTATGTCGACAAAAATAGTGCAGGTTTTGTGTATTTGATGTTTGAAACAGTGGAAGCAGCAAGTGCTGCTCAGCGTGCAATGCACATGCGGTGGTTTGCGCGCAAAATGATTTCGGCCATATACATGCAACCTCAGGTATATGAAGCCAAGTTTAAAGGGGTTGTGTGA | 1857 | 0.4674 | MDFDEYDYLEKTVEEEIDEKDSSKKGRESIDRTERSYRKRDEIEDGAELKRSKRSSGDDDEHVSRKDRDRDDDRDKERRRSGRDRDRDRDGERSSRDRGRDREKDVDREKDRRDKDRERERREREKEKEKERERSRRSKSRSEREREIEREERERSRRSVSRSERDREKEREERDRSRRSRSRSERDSIRERDFDMRDSRRLREKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHTCLFNSCCVLKFISLELIMRYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVADHVGGQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPINGSVPAQQAISLPIGNPGLMPALALPTQFMPTQMAEPVGTPSNCLLLKNMFDPSTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEAKFKGVV | 618 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa2g03119 | 618 | Gene3D | - | 149 | 339 | IPR012677 | - | |
Vifa2g03119 | 618 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 220 | 330 | IPR000504 | GO:0003723 | |
Vifa2g03119 | 618 | MobiDBLite | consensus disorder prediction | 13 | 192 | - | - | |
Vifa2g03119 | 618 | FunFam | Splicing factor CC1-like | 339 | 444 | - | - | |
Vifa2g03119 | 618 | SUPERFAMILY | RNA-binding domain, RBD | 211 | 265 | IPR035979 | GO:0003676 | |
Vifa2g03119 | 618 | MobiDBLite | consensus disorder prediction | 1 | 192 | - | - | |
Vifa2g03119 | 618 | SUPERFAMILY | RNA-binding domain, RBD | 520 | 606 | IPR035979 | GO:0003676 | |
Vifa2g03119 | 618 | SMART | rrm1_1 | 525 | 602 | IPR000504 | GO:0003723 | |
Vifa2g03119 | 618 | SMART | rrm1_1 | 356 | 429 | IPR000504 | GO:0003723 | |
Vifa2g03119 | 618 | SMART | rrm1_1 | 221 | 288 | IPR000504 | GO:0003723 | |
Vifa2g03119 | 618 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 448 | 542 | IPR029123 | - | |
Vifa2g03119 | 618 | Coils | Coil | 108 | 145 | - | - | |
Vifa2g03119 | 618 | CDD | RRM3_RBM39_like | 523 | 605 | - | - | |
Vifa2g03119 | 618 | Gene3D | - | 519 | 617 | IPR012677 | - | |
Vifa2g03119 | 618 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 547 | 598 | IPR000504 | GO:0003723 | |
Vifa2g03119 | 618 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 357 | 427 | IPR000504 | GO:0003723 | |
Vifa2g03119 | 618 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 227 | 264 | IPR000504 | GO:0003723 | |
Vifa2g03119 | 618 | SUPERFAMILY | RNA-binding domain, RBD | 354 | 429 | IPR035979 | GO:0003676 | |
Vifa2g03119 | 618 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 145 | 614 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Vifa2g03119 | 618 | Gene3D | - | 351 | 446 | IPR012677 | - | |
Vifa2g03119 | 618 | CDD | RRM1_RBM39_like | 221 | 326 | - | - | |
Vifa2g03119 | 618 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 355 | 433 | IPR000504 | GO:0003723 | |
Vifa2g03119 | 618 | NCBIfam | splicing factor, CC1-like family | 298 | 614 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Vifa2g03119 | 618 | Coils | Coil | 153 | 180 | - | - | |
Vifa2g03119 | 618 | FunFam | Splicing factor, CC1-like protein | 519 | 617 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa2g03119 | Vifa-Chr2 | 896182715 | 896189403 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa2g03119 | 327 | 428 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 33.981 | 8.03e-08 | 53.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa2g03119 | K13091 | - | gmx:100802446 | 683.33 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa2g03119 | 2 | 896182715 | 896189403 | Vifa2g03119 | 2 | 896182715 | 896189403 | ECH | |
Vifa2g03119 | 2 | 896182715 | 896189403 | Vifa2g03119 | 2 | 896182715 | 896189403 | PCT |