Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03119 ATGGATTTCGACGAGTACGATTATCTGGAGAAGACAGTGGAGGAGGAGATAGATGAGAAAGATTCTTCTAAGAAGGGGAGGGAGAGTATCGACAGGACCGAACGGAGCTACAGAAAGCGCGATGAGATCGAAGATGGCGCCGAATTGAAGAGGAGTAAGAGGTCCAGCGGTGACGACGATGAGCATGTCTCCAGGAAGGATAGAGATCGGGACGATGACCGCGACAAGGAGCGTCGTAGGAGTGGCAGGGATAGGGATAGGGACAGAGACGGTGAGAGGAGTAGCAGAGACCGAGGCCGAGACAGGGAGAAGGATGTGGATAGGGAGAAAGATAGGAGAGACAAGGATAGAGAAAGGGAAAGGAGGGAGAGGGAGAAGGAGAAGGAAAAGGAGAGAGAAAGGTCCAGGAGGAGCAAGAGTCGTTCTGAGCGGGAAAGAGAGATAGAACGGGAGGAGAGGGAGAGGTCTCGGAGAAGCGTAAGTCGTTCTGAACGTGATAGAGAGAAGGAACGGGAGGAGAGAGACAGGTCCAGGAGGAGCAGAAGTCGCTCTGAGCGTGATAGCATCAGAGAACGAGATTTCGACATGAGAGATAGCCGGAGACTTAGGGAGAAGAAGGAAGCTGTGGAGCCTGAGGCAGATCCAGAGAGGGATCAAAGAACTGTTTTTGCCTATCAGATGCCCTTAAAGGCAACAGAACGAGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTTCGACTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGCAATGCGATAATGATGAGGGATGATGGGAATACCTTGCACACATGTTTATTCAATTCATGCTGCGTACTCAAGTTTATATCACTTGAACTGATTATGAGGTATATTGAATTTTATGATGCAATGTCGGTGCCGATGGCAATTGCTCTCTCTGGTCAACTTCTTCTTGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTAGTTCAATCTAATACTACTACTGGAGCTGCTGGTGTGGTCGGACCATATGGAGCCGTGGACAGAAAACTGTATGTGGGGAACCTTCATTTCAATATGACCGAGAGCCAGTTGAGAGAGATTTTTGAGCCATTTGGTACTGTGGAGGTTGTGCAACTGCCTCTTGACCTGGAGACAGGACATTGCAAGGGTTTTGGATTTATTCAATTTGCCCACCTAGAACATGCAAAGGCTGCCCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCAGAACTATCAAGGTTTCATCTGTAGCAGACCATGTTGGAGGCCAAGATACAACAGCAAAATCTGCAGATTTTGATGATGATGAAGGCGGATTGGCTTTAAATGCCCAATCAAGAGCGTTGCTTATGCAGAAGTTGGATCGCTCTGGAATTGCTGCAAGCATTGGCTTACCCATTAATGGGTCAGTTCCCGCCCAGCAGGCTATTAGTTTGCCTATTGGTAATCCTGGATTAATGCCAGCACTAGCTCTACCAACTCAATTTATGCCTACTCAAATGGCTGAACCTGTCGGAACCCCCAGCAACTGCTTGCTGTTGAAGAATATGTTTGATCCATCAACTGAGACAGAACCAGATTTTGATCTAGACATCAAAGAAGATGTAGAAGAAGAGTGTTCTAAATATGGGCGGGTGAAGCATATCTATGTCGACAAAAATAGTGCAGGTTTTGTGTATTTGATGTTTGAAACAGTGGAAGCAGCAAGTGCTGCTCAGCGTGCAATGCACATGCGGTGGTTTGCGCGCAAAATGATTTCGGCCATATACATGCAACCTCAGGTATATGAAGCCAAGTTTAAAGGGGTTGTGTGA 1857 0.4674 MDFDEYDYLEKTVEEEIDEKDSSKKGRESIDRTERSYRKRDEIEDGAELKRSKRSSGDDDEHVSRKDRDRDDDRDKERRRSGRDRDRDRDGERSSRDRGRDREKDVDREKDRRDKDRERERREREKEKEKERERSRRSKSRSEREREIEREERERSRRSVSRSERDREKEREERDRSRRSRSRSERDSIRERDFDMRDSRRLREKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHTCLFNSCCVLKFISLELIMRYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVADHVGGQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPINGSVPAQQAISLPIGNPGLMPALALPTQFMPTQMAEPVGTPSNCLLLKNMFDPSTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEAKFKGVV 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03119 618 Gene3D - 149 339 IPR012677 -
Vifa2g03119 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 330 IPR000504 GO:0003723
Vifa2g03119 618 MobiDBLite consensus disorder prediction 13 192 - -
Vifa2g03119 618 FunFam Splicing factor CC1-like 339 444 - -
Vifa2g03119 618 SUPERFAMILY RNA-binding domain, RBD 211 265 IPR035979 GO:0003676
Vifa2g03119 618 MobiDBLite consensus disorder prediction 1 192 - -
Vifa2g03119 618 SUPERFAMILY RNA-binding domain, RBD 520 606 IPR035979 GO:0003676
Vifa2g03119 618 SMART rrm1_1 525 602 IPR000504 GO:0003723
Vifa2g03119 618 SMART rrm1_1 356 429 IPR000504 GO:0003723
Vifa2g03119 618 SMART rrm1_1 221 288 IPR000504 GO:0003723
Vifa2g03119 618 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 448 542 IPR029123 -
Vifa2g03119 618 Coils Coil 108 145 - -
Vifa2g03119 618 CDD RRM3_RBM39_like 523 605 - -
Vifa2g03119 618 Gene3D - 519 617 IPR012677 -
Vifa2g03119 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 547 598 IPR000504 GO:0003723
Vifa2g03119 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 427 IPR000504 GO:0003723
Vifa2g03119 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 264 IPR000504 GO:0003723
Vifa2g03119 618 SUPERFAMILY RNA-binding domain, RBD 354 429 IPR035979 GO:0003676
Vifa2g03119 618 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 145 614 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vifa2g03119 618 Gene3D - 351 446 IPR012677 -
Vifa2g03119 618 CDD RRM1_RBM39_like 221 326 - -
Vifa2g03119 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 433 IPR000504 GO:0003723
Vifa2g03119 618 NCBIfam splicing factor, CC1-like family 298 614 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vifa2g03119 618 Coils Coil 153 180 - -
Vifa2g03119 618 FunFam Splicing factor, CC1-like protein 519 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03119 Vifa-Chr2 896182715 896189403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03119 327 428 Eukaryotic Initiation Factors Gene Family AT4G34110 33.981 8.03e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03119 K13091 - gmx:100802446 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03119 2 896182715 896189403 Vifa2g03119 2 896182715 896189403 ECH
Vifa2g03119 2 896182715 896189403 Vifa2g03119 2 896182715 896189403 PCT