Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03115 ATGTGTATGTTCAAGGTGGCGAATCCAAGAGATAAAGTTATTAAAAGGGAACTCAATGATCCCACATTGTCAAGTGAAATGGTATTTCCTTTTCCTGGTATGAATAGAGATAGAGAAATGTCTGCTATGATCTCTGCTTTGACTCATATTGTTTCTGGAGATGTTCCAAACCAAAGCACTGCAGTTGAACCAAATATCAATATGTCTTCTTCTCCAAATTCTTCAACTAGTTATGGTACTAGTTCTTCTCTCAAAAGAACTAGGGAAGATGATCAGTTGATCCAGACACCAGACGCAACACTAATACCAACAAATGCAGAAAGTTCGAGAAATAGGACAACAACAACCAGAGTAACAAGAGAAATGGGAAATGCTGTGTATGAATATAGAAGAACAGAAGGTGTGGTAAGAGAAGGAGAAGAGAAAAGAAAGTACAGAGGAGTGAGACAGAGACCGTGGGGAAAATGGGCTGCGGAGATAAGAGATCCTTTCAAAGCAGCAAGAGTATGGTTAGGAACATTTGAAACAGCTGAAGCAGCTGCTAGAGCATACGATGAAGCTGCTCTTCGTTTTAGAGGAAACAAAGCAAAACTTAATTTCCCTGAGAATGTTACTCTTCGTCATCCTCCTCCAACAACGTCGAATCAGTGGAATATTTCGAATATGCCAAGTTCAGTTGTTTCTATTACAACTTCTACTGACCCTGTTGTTCATACTCTACCTTTTTCTTATTCACAACCTTCAACAAATTTTTATGATCCTTTTCAGTTTTCTGACATTCCTGCTAGGAATGTTTATGATGATAATGTGATTTTGAGTTCTACCATGGCTTCTCATCTTCAATCTTCTTCGTCATCCTTGTCACCAGCTTCTTCTCTGTCATCTTCTTCTTCTGCATTTGCTTCTTCTATGCAGACCAATGCTTCAGCTTCCACGTTTTATTCTTCCCAGTTTCCACCGTGGTCCGCCTCCGATCATAACTCTTCTTCCTCTAGATGA 999 0.3954 MCMFKVANPRDKVIKRELNDPTLSSEMVFPFPGMNRDREMSAMISALTHIVSGDVPNQSTAVEPNINMSSSPNSSTSYGTSSSLKRTREDDQLIQTPDATLIPTNAESSRNRTTTTRVTREMGNAVYEYRRTEGVVREGEEKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRHPPPTTSNQWNISNMPSSVVSITTSTDPVVHTLPFSYSQPSTNFYDPFQFSDIPARNVYDDNVILSSTMASHLQSSSSSLSPASSLSSSSSAFASSMQTNASASTFYSSQFPPWSASDHNSSSSR 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03115 332 SUPERFAMILY DNA-binding domain 144 202 IPR016177 GO:0003677
Vifa2g03115 332 Gene3D AP2/ERF domain 143 203 IPR036955 GO:0003700|GO:0006355
Vifa2g03115 332 Pfam AP2 domain 144 193 IPR001471 GO:0003700|GO:0006355
Vifa2g03115 332 CDD AP2 144 203 IPR001471 GO:0003700|GO:0006355
Vifa2g03115 332 FunFam Ethylene-responsive transcription factor 2 143 202 - -
Vifa2g03115 332 MobiDBLite consensus disorder prediction 55 90 - -
Vifa2g03115 332 SMART rav1_2 144 207 IPR001471 GO:0003700|GO:0006355
Vifa2g03115 332 ProSiteProfiles AP2/ERF domain profile. 144 201 IPR001471 GO:0003700|GO:0006355
Vifa2g03115 332 PRINTS Ethylene responsive element binding protein signature 167 183 IPR001471 GO:0003700|GO:0006355
Vifa2g03115 332 PRINTS Ethylene responsive element binding protein signature 145 156 IPR001471 GO:0003700|GO:0006355
Vifa2g03115 332 PANTHER DNA-BINDING DOMAIN 87 301 IPR044808 GO:0003700|GO:0009873
Vifa2g03115 332 MobiDBLite consensus disorder prediction 55 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03115 Vifa-Chr2 894346408 894347605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03115 28 206 AP2-EREBP Transcription Factor Family AT5G61890 42.458 1.15e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa2g03115 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03115 - - mtr:11421690 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03115 2 894346408 894347605 Vifa2g03115 2 894346408 894347605 ECH