Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03111 ATGAAACCCCTCTACAGCACCAACACTCTCTTACTCCTCCTTGCTCTATTCCTTCTCCACTTAGGACCATCCCACTCTTCAACTTCAGCCTCTCAACTTCTCTACTTCAAACAATCTCTCCCTAACCCATCCCTCCTCCATGACTGGCTCCCTTCCAGAAACCCATGCTCCTTCACTGGCATCACCTGCAACCAAACCACCGTTACTTCCATAGACCTCACCTCCATCCCTCTCAGCACAAATCTCACCGTCGTCGCCACCTACCTTCTCACCCTCGACCACCTCCAAATCCTCACCTTGAAATCCTCCAACATCACTTCCTCTCCCATTTCCCTCTCCCACACCAAGTGCACTTCCTCACTCACCTCCCTAGATCTATCACAAAACACTATCTCCTCCTCTTTCTCCAACTTTTCCTTTCTCTCATCATGCTCCGCTCTTAAATCTCTTAACCTCTCCAACAACCTGCTCGCCTTCGATTCTCCCAAATGGACTCTCCCTTCGTCTCTCCGCTTTCTCGACGTTTCCAACAACAAGATTTCCGGCCCTGGATTCTTCCCTTGGATCCTTAACCATGACTTAGAGTTTTTATCTCTCAGAGGAAACAAAGTCACCGGCGAAACCGACTTCTCCGGTTACAAAACTCTCAAGTATCTAGATATTTCCTCTAATAATTTCACTGTCTCTATACCTTCCTTCGGTGACTGTTCATCTCTCACACACCTCGATATCTCTGCAAATAAATACTTCGGCGACATTACCAGAACTCTCTCCCCTTGCAAAAACCTCCTCCATCTCAACCTCTCCGGCAACCAGTTCACCGGCGCCGTTCCTTCTCTTCCTTCTGGCTCCCTACAGTTCCTCTACCTTGCTGAAAACCACTTCGCCGGAATAATCCCGCCGCGTCTGGCTGACCTCTGCTCAACTCTCATCGAACTCGATCTCTCTTCCAACAACCTCACCGGTCCAGTCCCACGCGAGTTCGGCGCGTGCAGTTTGTTGAAGTCTTTCGACATATCGAGCAACAAGTTCGCCGGTGAACTTCCGATGGAGATTCTAACTGAGATGAGTGGTTTGAAAGAACTGACCGTGTCGTTTAACGAATTTTCTGGTCTACTTCCCGAGTCGCTGTCAAAGTTAACGGGTTTGGAATCGTTAGATCTGAGTTCGAATAACTTCAGCGGAACGATTCCGAGGTGGCTTTGCGGAGAAGAATGGGGGAATAATTTGAAGGGACTTTACCTGCAAAATAACGTGTTCACGGGTTTTATTCCTCCAACGCTGAGTAACTGTTCTAACCTCGTTGCTCTTGATTTCAGTTTCAATTACCTCACGGGAACCATTCCTCCGAGTTTAGGTTCGCTTTCGAAGCTTCGCGACTTAATCATGTGGTTGAATCAGCTTCACGGGGAGATTCCTCAAGAGCTTCGAGATATGGCGAGTCTTGAGAATTTGATTCTTGATTTTAATGAGTTGAGTGGAACCATTCCTTCGGGGCTGGTGAATTGCACTAAGCTGAATTGGATCTCGCTGTCGAATAACAGGCTTACCGGGGAGATTCCTTCGTGGATTGGGAAGCTTTCGAATCTTGCTATATTGAAACTGAGTAATAACTCGTTCTCTGGGAGGATTCCGCCGGAGTTGGGAGATTGCCCTAGCTTGATATGGTTGGATCTGAATACAAATTTTCTTACTGGACCGATACCTCCTGAGTTGGCGAAGCAATCGGGGAAAGTTGTGGTTAATTTCATCAGTGGGAAGACATATGTTTACATTAAGAATGATGGTAGTAAAGAGTGTCATGGAGCTGGGAGCTTGCTGGAATTTGCAGGGATTAATCAGGAACAATTGGGGAGAATTTCAACAAGGAACCCTTGCAATTTCACTAGGGTTTATGGAGGTAAGCTTCAGCCTACGTTTACGCTTAATGGCTCGATGATCTTTTTGGATGTTTCACACAACATGTTGTCTGGTACTATTCCTAAGGAAATTGGTGAAATGGTATTTCTCTATGTTTTGCATTTGAGTCATAATAACCTATCTGGTAGCATTCCTCAAGAGCTTGGTAGGATGAAGAATCTCAATATTCTTGATCTTTCTTACAATAAGTTGCAAGATCAAATTCCACAAACCTTAACAAGGCTTTCATTGCTCACTGAGATTGACTTCTCCAACAATTGTCTCTCTGGAACGATTCCGGAATCTGGTCAATTTGACACGTTTCCGGTTGGTAAGTTCCTGAACAACTCTGGTCTCTGCGGTGTTCCTCTTCCACCGTGTGGGGCGGACTTGGGAGGGGGTGCAGGTTCGCAGCATAAGTCTCATAGGAGACAGGCGTCTCTTGCAGGGAGTGTGGCAATGGGATTGCTTTTCTCTCTTTTCTGTGTTTTCGGTTTGATCATTATTGCTATTGAGACAAGAAAGAGGAGGAAGAAAAAAGAGGCAGCTATTGATGGCTACATTGAAAATTCTCATTCTGGCAATGCCAATAATTCTGGCTGGAAATTGACCAGTGCCCGCGAAGCTCTCAGTATTAACCTCGCAACGTTTGAAAAGCCACTTCGAAAGCTCACTTTCGCAGATCTTCTAGCAGCAACCAATGGCTTTCACAATGACAGTCTCATTGGTTCAGGTGGTTTCGGCGATGTGTATAAAGCTCAGTTGAAAGACGGAAGTGTTGTGGCCATCAAGAAGCTGATACATGTAAGTGGACAAGGGGACAGAGAATTCACAGCTGAAATGGAAACCATTGGGAAAATTAAGCACAGAAACCTTGTTCCTCTTCTGGGATACTGCAAGGTTGGAGAGGAAAGACTGTTGGTTTATGAGTACATGAAATATGGAAGTCTAGAAGATGTCCTGCACGACCCGAAGAAAGCTGGGATCAAGATGAATTGGTCAGTGAGGAGGAAGATTGCAATTGGAGCTGCAAGAGGGTTGGCTTTTCTCCACCATAACTGTATTCCACATATCATTCACAGAGACATGAAATCCAGCAATGTCTTGCTCGATGAAAATTTGGAAGCCAGGGTCTCTGATTTTGGTATGGCTAGGCTTATGAGTGCTATGGACACACATTTGAGTGTAAGCACATTGGCGGGCACGCCGGGTTATGTTCCTCCAGAATACTATCAAAGCTTTAGATGCTCCACTAAAGGCGACGTTTATAGTTATGGTGTAGTTTTGCTGGAGTTGCTGACGGGGAAAAGACCAACCGATTCAGCTGATTTTGGCGATAACAATCTTGTCGGATGGGTTAAACAACATGCCAAACTCAAAATAAGTGATGTCTTTGATAAAGAGCTTATGAAAGAAGACCCCAATTTGGAGATCGAGCTTTTGCAGCATTTAAAGGTAGCTTGTGCTTGTTTGGACGATAGACCTTGGAGGAGACCTACAATGATTCAAGTCATGGCAATGTTCAAGGAAATACAAGCAGGTTCAGGAATGGATTCTCAGTCTACTATAGCCGCTGAAGACGAAGGTTTCAACGCCATCGAAATGGTTGAAATGAGCATAAAAGAAGTCCCTGAATCAAACAAGCATTAA 3549 0.4528 MKPLYSTNTLLLLLALFLLHLGPSHSSTSASQLLYFKQSLPNPSLLHDWLPSRNPCSFTGITCNQTTVTSIDLTSIPLSTNLTVVATYLLTLDHLQILTLKSSNITSSPISLSHTKCTSSLTSLDLSQNTISSSFSNFSFLSSCSALKSLNLSNNLLAFDSPKWTLPSSLRFLDVSNNKISGPGFFPWILNHDLEFLSLRGNKVTGETDFSGYKTLKYLDISSNNFTVSIPSFGDCSSLTHLDISANKYFGDITRTLSPCKNLLHLNLSGNQFTGAVPSLPSGSLQFLYLAENHFAGIIPPRLADLCSTLIELDLSSNNLTGPVPREFGACSLLKSFDISSNKFAGELPMEILTEMSGLKELTVSFNEFSGLLPESLSKLTGLESLDLSSNNFSGTIPRWLCGEEWGNNLKGLYLQNNVFTGFIPPTLSNCSNLVALDFSFNYLTGTIPPSLGSLSKLRDLIMWLNQLHGEIPQELRDMASLENLILDFNELSGTIPSGLVNCTKLNWISLSNNRLTGEIPSWIGKLSNLAILKLSNNSFSGRIPPELGDCPSLIWLDLNTNFLTGPIPPELAKQSGKVVVNFISGKTYVYIKNDGSKECHGAGSLLEFAGINQEQLGRISTRNPCNFTRVYGGKLQPTFTLNGSMIFLDVSHNMLSGTIPKEIGEMVFLYVLHLSHNNLSGSIPQELGRMKNLNILDLSYNKLQDQIPQTLTRLSLLTEIDFSNNCLSGTIPESGQFDTFPVGKFLNNSGLCGVPLPPCGADLGGGAGSQHKSHRRQASLAGSVAMGLLFSLFCVFGLIIIAIETRKRRKKKEAAIDGYIENSHSGNANNSGWKLTSAREALSINLATFEKPLRKLTFADLLAATNGFHNDSLIGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDPKKAGIKMNWSVRRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDKELMKEDPNLEIELLQHLKVACACLDDRPWRRPTMIQVMAMFKEIQAGSGMDSQSTIAAEDEGFNAIEMVEMSIKEVPESNKH 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03111 1182 FunFam serine/threonine-protein kinase BRI1-like 2 830 944 - -
Vifa2g03111 1182 Gene3D Ribonuclease Inhibitor 33 760 IPR032675 -
Vifa2g03111 1182 FunFam Serine/threonine-protein kinase BRI1-like 1 584 641 - -
Vifa2g03111 1182 SUPERFAMILY L domain-like 44 399 - -
Vifa2g03111 1182 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 641 759 - -
Vifa2g03111 1182 ProSitePatterns Serine/Threonine protein kinases active-site signature. 991 1003 IPR008271 GO:0004672|GO:0006468
Vifa2g03111 1182 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 163 404 - -
Vifa2g03111 1182 ProSiteProfiles Protein kinase domain profile. 869 1144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03111 1182 Gene3D Transferase(Phosphotransferase) domain 1 945 1146 - -
Vifa2g03111 1182 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 65 279 - -
Vifa2g03111 1182 SUPERFAMILY L domain-like 284 743 - -
Vifa2g03111 1182 Pfam Protein kinase domain 869 1139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03111 1182 ProSiteProfiles Leucine-rich repeat profile. 120 142 IPR001611 GO:0005515
Vifa2g03111 1182 Pfam Leucine Rich repeats (2 copies) 215 254 IPR025875 -
Vifa2g03111 1182 Pfam Leucine Rich repeat 307 322 IPR001611 GO:0005515
Vifa2g03111 1182 FunFam Brassinosteroid LRR receptor kinase 945 1146 - -
Vifa2g03111 1182 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 405 582 - -
Vifa2g03111 1182 SMART serkin_6 869 1141 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03111 1182 Pfam Brassinosteroid receptor island domain 577 641 IPR045381 -
Vifa2g03111 1182 Pfam Leucine rich repeat N-terminal domain 30 64 IPR013210 -
Vifa2g03111 1182 SUPERFAMILY Protein kinase-like (PK-like) 855 1146 IPR011009 -
Vifa2g03111 1182 ProSitePatterns Protein kinases ATP-binding region signature. 875 898 IPR017441 GO:0005524
Vifa2g03111 1182 SMART LRR_typ_2 479 503 IPR003591 -
Vifa2g03111 1182 SMART LRR_typ_2 356 379 IPR003591 -
Vifa2g03111 1182 SMART LRR_typ_2 260 287 IPR003591 -
Vifa2g03111 1182 SMART LRR_typ_2 380 404 IPR003591 -
Vifa2g03111 1182 SMART LRR_typ_2 527 551 IPR003591 -
Vifa2g03111 1182 SMART LRR_typ_2 92 115 IPR003591 -
Vifa2g03111 1182 SMART LRR_typ_2 691 715 IPR003591 -
Vifa2g03111 1182 Gene3D - 582 642 - -
Vifa2g03111 1182 Pfam Leucine Rich Repeat 262 288 IPR001611 GO:0005515
Vifa2g03111 1182 Gene3D Phosphorylase Kinase; domain 1 830 944 - -
Vifa2g03111 1182 Pfam Leucine rich repeat 334 393 IPR001611 GO:0005515
Vifa2g03111 1182 Pfam Leucine rich repeat 670 726 IPR001611 GO:0005515
Vifa2g03111 1182 Pfam Leucine rich repeat 505 562 IPR001611 GO:0005515
Vifa2g03111 1182 CDD STKc_IRAK 875 1144 - -
Vifa2g03111 1182 PRINTS Leucine-rich repeat signature 691 704 - -
Vifa2g03111 1182 PRINTS Leucine-rich repeat signature 383 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03111 Vifa-Chr2 890982696 890986244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03111 32 1178 Receptor kinase-like Gene Family AT4G39400 69.337 0.0 1515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vifa2g03111 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03111 K13415 - gmx:100499629 1832.77