Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03110 ATGATGTCAACAACAAATATTGTTAACCACCACAGCTTGTTTGATGAAGAACAACAAGATCATGAGATCTCTATGCAGATGGGATTCAATATTCCTTTCCCTCCAAACATGACTTTACCTCCTTTAGGTAATTGCCATGATCAATCTTTGAAAGGTATCAGTGCAATAATAAGTCCTGAAGCTGCAACATTTGCTGAAACTTTACTAGCAACAGCTGTTCAAAAACCACGAGAATTCGAAGATCTTGCTTCTAGTTTTGGTGCTAGTGGAGGCCAAAACCTTGACTTAAACAGATCCAGAATGAATTCATGGGCATGGGGAGATGTGAGTGATTGCTGGATGGGTAAAAGAAATAATGGAGGAGATAATCATAATCATATAGGGGTTTCTGCAGCTATAAAGATGAAGAAAATGAAAGGAAGAAGGAAGGTGAGGGAACCTAGGTTTTGCTTCAAAACAATGAGTGATATAGATGTGTTGGATGATGGTTACAAATGGAGAAAGTACGGACAGAAAGTGGTCAAGAACACTCAGCATCCCAGAAGCTACTACCGTTGCACACAAGACAGTTGTAGAGTAAAGAAACGTGTAGAGCGATTGGCTGAGGATCCAAGAATGGTGATAACCACATATGAAGGAAGACATGCTCACTCTCCATCAAATGAAGTTGAAGAATCACAAACTCAATCTGAACTTGCTAATTTCTTCTGGTAG 714 0.395 MMSTTNIVNHHSLFDEEQQDHEISMQMGFNIPFPPNMTLPPLGNCHDQSLKGISAIISPEAATFAETLLATAVQKPREFEDLASSFGASGGQNLDLNRSRMNSWAWGDVSDCWMGKRNNGGDNHNHIGVSAAIKMKKMKGRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDSCRVKKRVERLAEDPRMVITTYEGRHAHSPSNEVEESQTQSELANFFW 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03110 237 ProSiteProfiles WRKY domain profile. 155 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g03110 237 SMART WRKY_cls 160 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g03110 237 MobiDBLite consensus disorder prediction 222 237 - -
Vifa2g03110 237 SUPERFAMILY WRKY DNA-binding domain 152 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g03110 237 Pfam WRKY DNA -binding domain 161 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g03110 237 FunFam WRKY transcription factor 57 146 220 - -
Vifa2g03110 237 Gene3D WRKY domain 147 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g03110 237 MobiDBLite consensus disorder prediction 214 237 - -
Vifa2g03110 237 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 123 222 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03110 Vifa-Chr2 889510214 889511651 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03110 122 237 WRKY Transcription Factor Family AT4G39410 73.171 7.58e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa2g03110 WRKY 1.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03110 - - gmx:100127389 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03110 2 889510214 889511651 Vifa2g03110 2 889510214 889511651 ECH
Vifa2g03110 2 889510214 889511651 Vifa1g01404 1 228408139 228411438 PCT