Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03106 ATGGACGTTTATTTTGAAAACCCTAACCCATTTTCTGGAGTTAATAGTAATATACCTCCTCCTCTTTCCTCTGATTTCATTAACTTATCTGATTATCTCGAGCTTGATGATGATCTTGTTGCTGCTAATCAAGACTCTAGTTGGTCACTAAGTACAGAAACTCCTGAATCATCTGATAGAGCAGGTTCCATTAATGATATTAATGTCATTAATCAAGGGTTTAGTGATGAGATTGAAACTTCTATCAACAACAACAATAATAACATGATCATAAAACGCAAAGGTAGAGGGATTAATGAAAGTACAGTAGAAGTGAGTCCAAGGGTTACGTTTAGAACGAGATCGCAGTTTGAGATTATGGATGATGGATACAAATGGAGGAAGTATGGAAAGAAGTTTGTCAAGAATAATTCCAACCCAAGGAACTACTATAAGTGTTCAGGTGAAGGATGTGGTGTGAAGAAGAGGGTGGAAAGGGATAGGGAAGATACAAGCTATGTGTTAACAAGTTATGATGGTGTCCACAATCATGAGAGTCCGTGCACTTCGTACTACACTCCACCAGCAATGTCTTTGGTGTATTCCAATGAATGGCAACTGCAGCAGCAGCCTTCTGCAAACTCATCATCTTCTAGTTAA 639 0.3834 MDVYFENPNPFSGVNSNIPPPLSSDFINLSDYLELDDDLVAANQDSSWSLSTETPESSDRAGSINDINVINQGFSDEIETSINNNNNNMIIKRKGRGINESTVEVSPRVTFRTRSQFEIMDDGYKWRKYGKKFVKNNSNPRNYYKCSGEGCGVKKRVERDREDTSYVLTSYDGVHNHESPCTSYYTPPAMSLVYSNEWQLQQQPSANSSSSS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03106 212 ProSiteProfiles WRKY domain profile. 115 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g03106 212 Gene3D WRKY domain 107 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g03106 212 Pfam WRKY DNA -binding domain 121 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g03106 212 SUPERFAMILY WRKY DNA-binding domain 112 180 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g03106 212 SMART WRKY_cls 120 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g03106 212 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 60 201 IPR044810 GO:0003700
Vifa2g03106 212 FunFam WRKY transcription factor 57 106 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03106 Vifa-Chr2 888603982 888605202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03106 96 196 WRKY Transcription Factor Family AT5G64810 62.136 2.39e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa2g03106 WRKY 3.4e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03106 - - mtr:11423676 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03106 2 888603982 888605202 Vifa2g03106 2 888603982 888605202 ECH