Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03103 ATGGAATTAGCCTCCAAGCTTCACCACCTCGACCTCACCGGAGCATTCATTCTCGATTCCCGACGCTTACCACGCACCCTAACTCACACTCATCTCACCACCAACACTAATTTAGTTTACCCCAATCGATTCTTTCCCTCCAAAAAACCTAATTCCACTTCACGTTTATCCGCCGTAGCCGCCGTCGACGACACTCCAGTAGCCGAAGACGACATCGAGTCTCTATTCTCCTCCAAACCTTCAGTTAATGAAAGACGCGGAAACAAGCAATCTAGTAGCGGCGCTTCAACCGTTTCATCCGGTGTGAAACTAGAAAACATCAGGAAAACGTATAAGGGTGTTACGGTTTTGAAGGAAGTTAACTGGGATGTGAAAAAGGGAGAGAAAGTTGGTTTGGTTGGTGTTAATGGTGCGGGGAAGACGACGCAGATGAGGATTATTGCTGGTCTTGAGGAACCGGATTCCGGGAATGTGATGAAGGCGAAACCGAATATGAAAATTGCGTTTTTGAGTCAGGAGTTTGAGGTGTCGCAGAGTAGGACTGTCAGGGAGGAGTTTATGAGTGCTTTTAAAGAGGAAATGGAGGTTGCTACGAAGCTGGAGAAAGTGCAGAAGGCGCTTGAGGGTTCTGGTAATGATTTGGAGTTGATGGGGAGGCTTTTGGATGAGTTTGATTTGCTTCAGAGACAAGCGCAGTCTGTGAATTTGGATGTTGTTGATTCCAAGATAAGTAAATTGATGCCTGACCTTGGTTTTGCTGTAGAGGATTCTGATCGGTTGGTTGCTTCTTTTAGTGGTGGATGGCAAATGAGGATGTGTCTAGGAAAGATTTTACTTCAGGAACCAGATTTGTTATTGTTAGATGAGCCTACAAATCACCTTGATCTTGACACCATTGAGTGGCTTGAAGAATATCTTAACATGCAGGATGTGCCAATGGTTATCATTTCCCATGACAGGGCTTTTCTCGATCAACTATGTACAAAAATTGTGGAAACTGACATGGGTGTGTCCAGGACATTTGAGGGAAATTATTCTCAGTATATACTTTCAAAGGCAACTTGGATCGAAACACAGTATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAACAGACAAGAGAGTTGATAAGTAGGTTAGGTGCCGGAGCAAGTTCTGGCCGTGCTTCTTCCGCTGAGAAGAAATTGGAAAGACTTCTGGGAGAGGAACTAGTACAGAAGCCATTTGAACGGAAACAAATGAAAATCAGGTTCCCTGTTCGTGGAAACAGTGGAAGATCTGTTGTAACAGTTAGGAACTTGGGTTTTGGCTTTGAGGATAAAATACTTTTCAACAAGGCAAATCTTACAATCGAAAGGGGAGAAAAAATTGCTATTCTTGGTCCAAATGGATGTGGCAAGAGTACTTTACTAAAATTGATTATGGGTTTAGAGAAGCCAATCAGCGGTGAAGTTATACTTGGGGAGCATAATGTATTGCCCAACTATTTTGAGCAAAATCAGGCTGAGGCACTTGATCTGGAAAAGACAGTGCTTGAGACAGTAGAGGAAGCTGCAGAGGACTGGAGGAGTGATGATATTAAAGGACTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGCCCGTAAAGTTTCTCTATTGAGTGGTGGCGAGAAGGCACGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTCCTTGTTTTGGATGAACCGACCAATCACTTGGATATACCTTCTAAAGAAATGCTTGAGGAGGCAATAAACGAGTACGAGGGAACTATTATCACCGTATCTCATGATCGGTATTTTATTAAGCAGATAGTTAATAGAGTGATTGAAGTTAAAGATGGCAATTTACAGGATTATGCTGGAGATTATAATTATTATTTGGAGAAGAATCTTGATGCTAGGGAAAGAGAGCTTGAACGCCAGGCAGAGCTCGAGGACAAAGCTCCTAAATTGAAAGCCAAATCTAAGATGTCCAAGGCTGAGAAAGAAGCAAGGAAGAAGCAAAAGATGCAGGCTTTTCAGGCAGCAAAACAGAAGTCTAAAGGTGCAAAAAATTCAAAGAGATGGAATTGA 2091 0.4266 MELASKLHHLDLTGAFILDSRRLPRTLTHTHLTTNTNLVYPNRFFPSKKPNSTSRLSAVAAVDDTPVAEDDIESLFSSKPSVNERRGNKQSSSGASTVSSGVKLENIRKTYKGVTVLKEVNWDVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDSGNVMKAKPNMKIAFLSQEFEVSQSRTVREEFMSAFKEEMEVATKLEKVQKALEGSGNDLELMGRLLDEFDLLQRQAQSVNLDVVDSKISKLMPDLGFAVEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEEYLNMQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYILSKATWIETQYAAWEKQQKEIEQTRELISRLGAGASSGRASSAEKKLERLLGEELVQKPFERKQMKIRFPVRGNSGRSVVTVRNLGFGFEDKILFNKANLTIERGEKIAILGPNGCGKSTLLKLIMGLEKPISGEVILGEHNVLPNYFEQNQAEALDLEKTVLETVEEAAEDWRSDDIKGLLGRCNFKSDMLARKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYEGTIITVSHDRYFIKQIVNRVIEVKDGNLQDYAGDYNYYLEKNLDARERELERQAELEDKAPKLKAKSKMSKAEKEARKKQKMQAFQAAKQKSKGAKNSKRWN 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03103 696 MobiDBLite consensus disorder prediction 76 99 - -
Vifa2g03103 696 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 101 688 - -
Vifa2g03103 696 MobiDBLite consensus disorder prediction 646 676 - -
Vifa2g03103 696 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 102 360 IPR003439 GO:0005524
Vifa2g03103 696 MobiDBLite consensus disorder prediction 75 99 - -
Vifa2g03103 696 MobiDBLite consensus disorder prediction 646 696 - -
Vifa2g03103 696 FunFam Putative ABC transporter ATP-binding component 103 387 - -
Vifa2g03103 696 FunFam ABC transporter ATP-binding protein 389 658 - -
Vifa2g03103 696 ProSitePatterns ABC transporters family signature. 548 562 IPR017871 GO:0005524|GO:0016887
Vifa2g03103 696 Gene3D - 393 659 IPR027417 -
Vifa2g03103 696 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 429 644 IPR003439 GO:0005524
Vifa2g03103 696 Pfam ABC transporter 445 576 IPR003439 GO:0005524
Vifa2g03103 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 337 IPR027417 -
Vifa2g03103 696 Pfam ABC transporter 331 418 IPR032781 -
Vifa2g03103 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 634 IPR027417 -
Vifa2g03103 696 ProSitePatterns ABC transporters family signature. 264 278 IPR017871 GO:0005524|GO:0016887
Vifa2g03103 696 Coils Coil 640 685 - -
Vifa2g03103 696 CDD ABCF_EF-3 102 332 - -
Vifa2g03103 696 Gene3D - 99 383 IPR027417 -
Vifa2g03103 696 SMART AAA_5 126 341 IPR003593 GO:0016887
Vifa2g03103 696 SMART AAA_5 453 621 IPR003593 GO:0016887
Vifa2g03103 696 CDD ABCF_EF-3 429 620 - -
Vifa2g03103 696 Pfam ABC transporter 117 292 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03103 Vifa-Chr2 888060412 888065968 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03103 426 646 Calmodulin-binding Proteins AT2G36910 25.506 2.48e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03103 - - gmx:100796907 1055.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03103 2 888060412 888065968 Vifa2g03103 2 888060412 888065968 ECH