Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03101 ATGGCACCAACACAGAAAACCGCAAGAACACCCAGAGTCAGCCGTAACCCTGAATTGATCAGGGGTATCGGAAAATACTCCAGGTCCACGATGTACCACAAGAGGGGACTCTGGGCTATTAAGGCCAAAAACGGTGGTGCTTTCCCCCGCCACGATCCAGCTCCTAAGCCTGAAGCTCCTGTCGAGAAGGCTCCTAAATTCTATCCTGCTGATGATGTTAAGAAGCCACTACGCAACAAACACAAACCAAAGCCCACAAAGCTTAGGGCTAGCATTACTCCAGGAACAGTTTTGATTCTTCTTGCCGGAAGATTCAAGGGAAAGCGAGTAGTTTTTCTCAAGCAGCTTCCTTCTGGACTCCTCCTTGTTACTGGCCCTTTCAAGATTAACGGAGTTCCATTGAGGCGTGTCAACCAATCATATGTTATTGGCACATCAACCAAAGTAGATGTTTCTTCTGTTAATGTTGAAAAGTTTGATGACAAGTACTTCTCAAAAGAATCCCAAAAGAAAACAAAGAAGGGAGAGGGTGAATTCTTTGAAGCAGACAAGGAGGATAAGAAAGTGCTCCCCCAGTCAAAGAAAGATGATCAAAAGACTCTCGATGCAGGTGTGAAGCCTCATGAGTTAGTGTTCTAG 639 0.4538 MAPTQKTARTPRVSRNPELIRGIGKYSRSTMYHKRGLWAIKAKNGGAFPRHDPAPKPEAPVEKAPKFYPADDVKKPLRNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVSSVNVEKFDDKYFSKESQKKTKKGEGEFFEADKEDKKVLPQSKKDDQKTLDAGVKPHELVF 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03101 212 Pfam Ribosomal protein L6e 129 206 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vifa2g03101 212 FunFam 60S ribosomal protein L6 90 174 - -
Vifa2g03101 212 MobiDBLite consensus disorder prediction 183 212 - -
Vifa2g03101 212 CDD KOW_RPL6 84 212 IPR041997 -
Vifa2g03101 212 Pfam Ribosomal protein L6, N-terminal domain 8 63 IPR005568 GO:0003735|GO:0005840|GO:0006412
Vifa2g03101 212 SUPERFAMILY Translation proteins SH3-like domain 90 179 IPR008991 -
Vifa2g03101 212 Gene3D - 90 174 IPR014722 -
Vifa2g03101 212 PANTHER 60S RIBOSOMAL PROTEIN L6 10 205 IPR000915 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03101 Vifa-Chr2 887259479 887260944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03101 9 212 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 71.930 7.43e-101 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03101 K02934 - gmx:100499766 347.051