Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03100 ATGTCTTCAAAGGTTTTGGCTAAGAAATGGGGGAAATCAAGTGTTTTTAGAAAAGATAGAGAACCAATGTTTGGAAATGGTTTAGTGATGGCTGAAGGCACCGCATGGATCCATCATCGACATGTTATAGCCCCGACATTTACTCCACTTAATCTTAAGACAATGGCAAGCATGATGGTTTATTCCACCAGGAAAATGATCAAAAGGTGGGATACCCAAATTAACTTCGGCAACCTTGAAATCGAAATCGAAAAAGAGATTGTAGCAACCCCCGAAGAGATCATAGCAAAAGCAAGCTTTGGAATGGGAGGTGAAAATGGAAAATTAGTTTTTGATCAATTAAGAACTTTGCAGATGACCCTTTTTAAGACCAATGGATATGTTGGGGTTCCATTTGAAAAATTATTTAATTTCAAGAAAACATTAGAAGCAAAGAAAATTGGTGAAGAAGTTGACAAGCTCATGTTATCCATCATAGAAGATAGGATGAATTCAAATGATAAGAAACAACATGAACAAGATTTATTGGGTCATTTGTTGAAAGGAAATCATGATATTGATGGAAACTTGAACAAGACATTAACAAAAAAGGAATTGCTTGATGAGTGCAAGACATTTTTCTTTGGTGGCTATGAAACAACATCACTTTCAATCACATGGACTTTGCTACTTCTAGCTTTGCATCAAGATTGGCAAAACCAATTGAGAGATGAAATTAAACAAGTGATTGGTAATGTTGAAGAACTTGACATCAACTTGCTTGCTAATTTAAAGAAGATGAAATGGGTGATGAGTGAAGCACTTAGACTTTACCCACCATCTCCAAATGTGCAAAGGCAAACTATGGAGGATATTCAAGTTAATAATTTAAAGGTGCCTAAAGGGACCAATATTTGGATTGATGTTGTAGCAATGCACCATGATGTTGCAATATGGGGGAATGATGCCAACAAGTTCAAACCAGAGAGATTTATGAATGATGCAAATGGAGAATCCAACAACAAAATGGGGTACTTGCCTTTTGGTTTTGGAGGAAGAGCATGTGTTGGTAGGAACTTAACTTTCATGGAATATAAGATAGTGCTAACACTACTTCTCTCTAAGTTTAATTTTAAAATCTCTCCTAGTTATCACCATTCTCCTACTATCATGTTGTCTCTTAGGCCCAATCATGGACTTCCTCTCATAGTTCGACCATTCTAG 1203 0.3633 MSSKVLAKKWGKSSVFRKDREPMFGNGLVMAEGTAWIHHRHVIAPTFTPLNLKTMASMMVYSTRKMIKRWDTQINFGNLEIEIEKEIVATPEEIIAKASFGMGGENGKLVFDQLRTLQMTLFKTNGYVGVPFEKLFNFKKTLEAKKIGEEVDKLMLSIIEDRMNSNDKKQHEQDLLGHLLKGNHDIDGNLNKTLTKKELLDECKTFFFGGYETTSLSITWTLLLLALHQDWQNQLRDEIKQVIGNVEELDINLLANLKKMKWVMSEALRLYPPSPNVQRQTMEDIQVNNLKVPKGTNIWIDVVAMHHDVAIWGNDANKFKPERFMNDANGESNNKMGYLPFGFGGRACVGRNLTFMEYKIVLTLLLSKFNFKISPSYHHSPTIMLSLRPNHGLPLIVRPF 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03100 400 PANTHER CYTOCHROME P450 FAMILY MEMBER 12 392 - -
Vifa2g03100 400 Pfam Cytochrome P450 11 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g03100 400 PRINTS P450 superfamily signature 262 273 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g03100 400 PRINTS P450 superfamily signature 209 226 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g03100 400 PRINTS P450 superfamily signature 339 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g03100 400 PRINTS P450 superfamily signature 348 359 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g03100 400 Coils Coil 232 252 - -
Vifa2g03100 400 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 341 350 IPR017972 GO:0005506|GO:0016705
Vifa2g03100 400 PRINTS E-class P450 group I signature 198 215 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g03100 400 PRINTS E-class P450 group I signature 338 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g03100 400 PRINTS E-class P450 group I signature 348 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g03100 400 PRINTS E-class P450 group I signature 218 244 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g03100 400 SUPERFAMILY Cytochrome P450 11 399 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g03100 400 Gene3D Cytochrome P450 2 400 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03100 Vifa-Chr2 886553692 886555297 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03100 1 400 Cytochrome P450 AT5G52400 58.809 1.90e-174 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03100 - - gmx:100785284 571.622