Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03085 ATGAATCCTCCACCGCACTTCATCTTCTCCGCCCTACATTTACTCTTCATTTTCCTCACCTCCTCCGCCTCCCAACCGGAGCTCCGATCTCTACTAGAATTCAAAAAAGGCATAACCTCAGATCCATCAAATCTCGTTCTCAACTCATGGAACCCCTTTTCCATCACCGACTTCGACGTTTGTCCCCCCAAATGGGAAGGAATCTCCTGCGACGAACTCACCGGAAACGTCACCGGAATTGTACTCGAGAATCACAACCTCACCGGAGAGATAAAGTTCCATACTCTCCTCGACCTTAAAATGCTCAAAAACCTCAGTCTCGCCGGGAATCAGTTCACCGGAAGGTTACCCCCTTCTTTAGGTATAATTACCTCTCTCCAGCATTTGGATCTTTCGAGTAACAAATTCTACGGTCCAATTCCTGCACGGATCAACGATCTTTGGGGTCTGAATTACCTCAATTTATCAAATAACCAATTCAAAGGTGGATTTCCCACTGGTCTCAACAATCTTCAACAACTTAGGGTCCTCGATTTGCACAGTAACGAACTCTGGGCTGACATTGGTGACCTTCTTCCCACTCTTCGGAACCTCGAGTTTCTAGATTTGAGTCAGAATCAGTTCTATGGTGGACTTTCCATTACTCTTGAGAATGTTTCCTCTTTGGCTAATACTGTTCGGTTTTTGAACGTCAGTCACAATAAATTGAACGGGAACTTCTTTCTGAAGGACGCAATTGGGTTGTTTCGGAACTTGCGAGCTTTGGATTTGAGTGATAATATGATTAGAGGGGAGCTTCCTTCTTTTGTTTCCTTGCGTGAACTTCGAGTACTGAAACTTGCGAGTAATCTTTTCTTTGGGGCTGTGCCGGAGGACTTGTTGTTGACTTCAATGTCTTTGGAAGAATTGAATCTCAGTTCCAATGGATTTACTGGCTCAATTGGTGTAATTAACTCTACCACTATAAATATTTTGGATCTTTCATCTAATAGTTTATCAGGACCATTGCCAACTTCTTTGAGAAGCTGTACAATCATAGATTTGAGCAGGAATATGTTTTCTGGCGACATTTCTGTAATAGAGAACTGGGAAGCCACTGTGGAGGTTATTGATTTGAGTTCAAACAAGCTGTCAGGATCCTTGCCTTCAATTATAGAATATTCAAAATTGTCTACCCTTGACTTAAGTTTGAATGAACTTAATGGATCCATTCCAGTTAGTTTGGTTATTTCACCATCACTGACAAGACTCAATCTTTCTGGAAATCAATTTACAGGACCACTTTTGCTTCAAGGTTCAGGGGCTAGTGAATTATTACTCACGTCTCCTTTTCTGCCAATGGAATATTTTGATGTATCAAACAACTCTTTAGAAGGCTTCTTGCCTTCTGATATAGGTAGGATGGTTAAGCTCAAACTGCTGAATCTTGCAAGGAATGGCTTTTCTGGACAAATTCCTAATGAATTGAGCAAACTTATTGATTTAGTGTCCCTCGATTTGTCTAACAACAAATTTACTGGCAATATTCCTGACAAGCTTTCGTCTAGCTTGAATGTATTTAATGTGTCCAACAATGATCTATCTGGCCTTGTTCCCGAAAATTTGCGGCGATTTCCTACATCATCCTTTAACCCTGGAAATGAAAAGCTTAAGTTATCAAATGATTCTCCTAGTTATCCGTCACTGCCAGGCACTGTTCAAAATAAACATCATAGTTCAAAGGGTAATATCAGGATAGCAATTATCCTTGCTTCTGTGGGTGCTGCTGTGATGATTGCTTTTGTTTTATTGGCTTATCATCGAACACAAGCAAAAGAATTTCACGGGAGAAGTGAGTTTGGTGGTCAAACTACTGGAGGACTTTCAAGGGCTTCTCTCTTCAAGTTCCATTCAAATGCTCTTCCTCCATCATCTTCGGCGAGCTTTTCAAATGATCACTTGTTGATATCCAATTCAAGGTCACTTTCTGGACAGCAGTCAGAGTTTATAACTGAAATTTCTGAGCATGGCTTGTCTCAGGGAGTAGCAACCAGTTCAGCACCGGTGATTCCTAATTTGATGGATAACCCTCCTATGTCATCTGGAAGGAAGTCTTCACCCAGTTCCCCACTGTCGTCCTCACCGCGCTTTATAGAGGCTTGTGAAAAGCCTGTGATGTTGGACGTTTACTCACCAGATCGACTGGCCGGGGAACTTTTTTTTCTGGATTCTTCACTAGCATTCACTGCAGAGGAGTTATCTCGAGCTCCGGCTGAAGTTCTTGGCAGAAGTAGCCACGGCACTCTGTACAAAGCTACCCTAGACAGTGGTCATATGTTGACCGTGAAATGGTTAAGGGTGGGGTTAGTCAAACATAAAAAGGAGTTTGCCAGAGAAGTTAAAAGGATTGGTTCTATGAGGCATCCAAACATTGTGCCGTTACGAGCATACTATTGGGGGCCTAGGGAACAGGAGAGGCTTCTGTTAGCCGACTATATTCAAGGAGACAACTTGGCCCTCCATCTCTACGAGACCACACCTCGGAGATACTCGCCTTTGTCATTCAGTCAGAGAATAAAAGTTGCGGTTGATGTTGCAAGATGTCTTTTATACCTTCACGACCGAGGGCTTCCACACGGAAATCTGAAGCCGACAAATATTCTGTTAGCAGGCCCTGATTACGGTGCCTGTCTTACTGACTATGGTCTGCACCGCCTCATGACGCCGGCTGGAGTTGCAGAACAGATACTAAATCTAGGAGCACTCGGATACCGTGCTCCAGAACTTGCTTCTGCATCCAAACCACTTCCATCCTTTAAGGCCGATGTCTATGCACTTGGGGTGATCTTAATGGAATTATTAACGAGAAAAAGTGCAGGTGACATAATATCGGGACAATCGGGTGCTGTTGATCTTACAGATTGGGTTAGGCTGTGTGAGAGAGAAGGAAGGGTAATGGACTGTATAGACAGAGACATTGCAGGTGGTGAAGAATCCTCCAAAGAGATGGACCAACTGCTTGCAACATCTCTCAGGTGTATTCTCCCTGTACATGAAAGGCCTAACATCAGACAAGTTTTTGAAGATCTCTGTTCTATACCATCAGCTTGA 3090 0.4317 MNPPPHFIFSALHLLFIFLTSSASQPELRSLLEFKKGITSDPSNLVLNSWNPFSITDFDVCPPKWEGISCDELTGNVTGIVLENHNLTGEIKFHTLLDLKMLKNLSLAGNQFTGRLPPSLGIITSLQHLDLSSNKFYGPIPARINDLWGLNYLNLSNNQFKGGFPTGLNNLQQLRVLDLHSNELWADIGDLLPTLRNLEFLDLSQNQFYGGLSITLENVSSLANTVRFLNVSHNKLNGNFFLKDAIGLFRNLRALDLSDNMIRGELPSFVSLRELRVLKLASNLFFGAVPEDLLLTSMSLEELNLSSNGFTGSIGVINSTTINILDLSSNSLSGPLPTSLRSCTIIDLSRNMFSGDISVIENWEATVEVIDLSSNKLSGSLPSIIEYSKLSTLDLSLNELNGSIPVSLVISPSLTRLNLSGNQFTGPLLLQGSGASELLLTSPFLPMEYFDVSNNSLEGFLPSDIGRMVKLKLLNLARNGFSGQIPNELSKLIDLVSLDLSNNKFTGNIPDKLSSSLNVFNVSNNDLSGLVPENLRRFPTSSFNPGNEKLKLSNDSPSYPSLPGTVQNKHHSSKGNIRIAIILASVGAAVMIAFVLLAYHRTQAKEFHGRSEFGGQTTGGLSRASLFKFHSNALPPSSSASFSNDHLLISNSRSLSGQQSEFITEISEHGLSQGVATSSAPVIPNLMDNPPMSSGRKSSPSSPLSSSPRFIEACEKPVMLDVYSPDRLAGELFFLDSSLAFTAEELSRAPAEVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVKHKKEFAREVKRIGSMRHPNIVPLRAYYWGPREQERLLLADYIQGDNLALHLYETTPRRYSPLSFSQRIKVAVDVARCLLYLHDRGLPHGNLKPTNILLAGPDYGACLTDYGLHRLMTPAGVAEQILNLGALGYRAPELASASKPLPSFKADVYALGVILMELLTRKSAGDIISGQSGAVDLTDWVRLCEREGRVMDCIDRDIAGGEESSKEMDQLLATSLRCILPVHERPNIRQVFEDLCSIPSA 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03085 1029 FunFam Leucine-rich repeat receptor protein kinase EMS1 440 534 - -
Vifa2g03085 1029 MobiDBLite consensus disorder prediction 542 570 - -
Vifa2g03085 1029 Gene3D Ribonuclease Inhibitor 27 187 IPR032675 -
Vifa2g03085 1029 Gene3D Phosphorylase Kinase; domain 1 729 825 - -
Vifa2g03085 1029 Gene3D Ribonuclease Inhibitor 447 548 IPR032675 -
Vifa2g03085 1029 Gene3D Transferase(Phosphotransferase) domain 1 827 1029 - -
Vifa2g03085 1029 MobiDBLite consensus disorder prediction 680 707 - -
Vifa2g03085 1029 Pfam Leucine Rich repeat 297 313 IPR001611 GO:0005515
Vifa2g03085 1029 Pfam Leucine Rich repeat 411 426 IPR001611 GO:0005515
Vifa2g03085 1029 MobiDBLite consensus disorder prediction 691 707 - -
Vifa2g03085 1029 SUPERFAMILY RNI-like 80 425 - -
Vifa2g03085 1029 SUPERFAMILY Protein kinase-like (PK-like) 751 1023 IPR011009 -
Vifa2g03085 1029 SUPERFAMILY L domain-like 447 541 - -
Vifa2g03085 1029 ProSiteProfiles Leucine-rich repeat profile. 251 273 IPR001611 GO:0005515
Vifa2g03085 1029 Pfam Protein kinase domain 752 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03085 1029 Gene3D Ribonuclease Inhibitor 296 437 IPR032675 -
Vifa2g03085 1029 ProSiteProfiles Protein kinase domain profile. 748 1029 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03085 1029 Gene3D Ribonuclease Inhibitor 188 293 IPR032675 -
Vifa2g03085 1029 FunFam Pollen receptor-like kinase 1 826 1029 - -
Vifa2g03085 1029 PANTHER OS07G0626500 PROTEIN 9 1027 - -
Vifa2g03085 1029 Pfam Leucine rich repeat N-terminal domain 26 71 IPR013210 -
Vifa2g03085 1029 FunFam Leucine-rich repeat receptor-like protein kinase 733 825 - -
Vifa2g03085 1029 FunFam Nuclear pore complex protein NUP107 24 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03085 Vifa-Chr2 881317867 881322275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03085 11 1028 Receptor kinase-like Gene Family AT5G01890 29.971 1.09e-88 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa2g03085 Pkinase 4.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03085 - - gmx:100802768 1584.7