Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03084 ATGGGAAGAAGACATATGTTAGGTCCACCAGGAACCCTAAATACTATAACACCTTGTGCAGCATGTAAGCTTTTAAGAAGAAGATGTGCTCAAGAATGTCCTTTTTCTCCATATTTCTCCCCTCATGAACCTCAGAAATTTGCTTCTGTTCACAAAGTTTTTGGTGCCAGCAATGTCTCCAAGATGCTAATGGAGGTAGCAGAATGTTCTAGAGCAGATGCAGCAAATAGTCTTGTTTATGAAGCAAATGTGAGACTAAGAGATCCAGTTTATGGATGCATGGGTGCAATTTCTGCACTGCAACAACAGGTTCAATCTTTACAAAGTGAACTCAATGTATTAAGAGGTGAAATACTTAAATACAAATTAAGAGAAGCAGCTAACATCAACATGAATAACATGAATAATATGAATATGAATATGAATATGCTACCAGCTTCTTCTCATCATGTTCCAATGCTTCCTTCTAATTCTGTTGCTGTTTCAATCGCTGCTCCACCGCCGCCGCCTCCTCCTCCTCCTCTTCCTCTTACAAGTTCCAATTCCTCTTCTTCCATATATTATCAGCAGAGGGATCCCAACAACTATACCAGAATTTCAAGTGATGATAATATTTCATATTTTGGTTAA 630 0.3841 MGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVAECSRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQSELNVLRGEILKYKLREAANINMNNMNNMNMNMNMLPASSHHVPMLPSNSVAVSIAAPPPPPPPPPLPLTSSNSSSSIYYQQRDPNNYTRISSDDNISYFG 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03084 209 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 147 - -
Vifa2g03084 209 Pfam Lateral organ boundaries (LOB) domain 18 114 IPR004883 -
Vifa2g03084 209 MobiDBLite consensus disorder prediction 162 178 - -
Vifa2g03084 209 ProSiteProfiles LOB domain profile. 17 118 IPR004883 -
Vifa2g03084 209 MobiDBLite consensus disorder prediction 162 209 - -
Vifa2g03084 209 MobiDBLite consensus disorder prediction 179 209 - -
Vifa2g03084 209 Coils Coil 97 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03084 Vifa-Chr2 880731079 880731798 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03084 1 135 AS2 family AT2G30340 75.540 8.45e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa2g03084 LOB 1.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03084 - - gmx:100790799 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03084 2 880731079 880731798 Vifa2g03084 2 880731079 880731798 ECH
Vifa2g02611 2 694482390 694486433 Vifa2g03084 2 880731079 880731798 ECH