Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03083 ATGTCCAGAGAAAGGGAGAGATTTGATGAGATAGGAAAGAAGATTAAAAGGGAAGGAGATCATCATCATCATCAACATGTTTCAAATTCTTCTCCTCAGATGGGAAGAAGACATATGTTAGGTCCACCAGGAACCCTAAATACTATAACACCTTGTGCAGCATGTAAGCTTTTAAGAAGAAGATGTGCTCAAGAATGTCCTTTTTCTCCATATTTCTCCCCTCATGAACCTCAGAAATTTGCTTCTGTTCACAAAGTTTTTGGTGCCAGCAATGTCTCCAAGATGCTAATGGAGGTAGCAGAATGTTCTAGAGCAGATGCAGCAAATAGTCTTGTTTATGAAGCAAATGTGAGACTAAGAGATCCAGTTTATGGATGCATGGGTGCAATTTCTGCACTGCAACAACAGGTTCAATCTTTACAAAGTGAACTCAATGTATTAAGAGGTGAAATACTTAAATACAAATTAAGAGAAGCAGCTAACATCAACATGAATAACATGAATAATATGAATATGAATATGAATATGCTACCAGCTTCTTCTCATCATGTTCCAATGCTTCCTTCTAATTCTGTTGCTGTTTCAATCGCTGCTCCACCGCCGCCGCCTCCTCCTCCTCCTCTTCCTCTTACAAGTTCCAATTCCTCTTCTTCCATATATTATCAGCAGAGGGATCCCAACAACTATACCAGAATTTCAAGTGATGATAATATTTCATATTTTGGTTAA 729 0.3827 MSRERERFDEIGKKIKREGDHHHHQHVSNSSPQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVAECSRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQSELNVLRGEILKYKLREAANINMNNMNNMNMNMNMLPASSHHVPMLPSNSVAVSIAAPPPPPPPPPLPLTSSNSSSSIYYQQRDPNNYTRISSDDNISYFG 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03083 242 ProSiteProfiles LOB domain profile. 50 151 IPR004883 -
Vifa2g03083 242 MobiDBLite consensus disorder prediction 212 242 - -
Vifa2g03083 242 Coils Coil 130 157 - -
Vifa2g03083 242 MobiDBLite consensus disorder prediction 14 39 - -
Vifa2g03083 242 Pfam Lateral organ boundaries (LOB) domain 51 147 IPR004883 -
Vifa2g03083 242 MobiDBLite consensus disorder prediction 195 211 - -
Vifa2g03083 242 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 47 180 - -
Vifa2g03083 242 MobiDBLite consensus disorder prediction 195 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03083 Vifa-Chr2 880730882 880731798 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03083 5 168 AS2 family AT2G30340 64.671 6.23e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa2g03083 LOB 2.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03083 - - gmx:100790799 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03083 2 880730882 880731798 Vifa2g03083 2 880730882 880731798 ECH