LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g03082	ATGACTTCTTTAAATTTTTCTAGATTAACCATGATCATGACTATGTCTCTCTTTGTCCTCATCATAGTAGGGAGTGCCAATGCTCAACTTTCTACAAGCTTTTACTCAAGTTCTTGTCCCAAACTCTCTTCCACAGTGCAATCCACCATGCAATCAGCCATATCAAAAGAGGCTCGAATCGGTGCTTCTATTCTTCGGTTGTTCTTCCACGATTGCTTTGTCAACGGATGCGATGGGTCAATTCTACTCGATGACACGTCAAACTTTACCGGGGAGAAAAATGCATTTCCAAACAGAAACTCTGCTCGCGGATTTGAAGTCATTGATAATATAAAGACAGCGGTAGAGAACATATGTCCCGGAGTTGTATCTTGTGCTGATATTCTTGCCATTGCTGCCGCAGACTCTGTTGCAATTCTTGGAGGACCATCCTGGAATGTAAAACTCGGAAGAAGAGACGCTAAGACGGCTAGTCAGTCAGCTGCTAATACAGCCATCCCAGCACCAACATCCAACCTCAGTACACTTACCTCAATGTTTAGTGCAGTTGGTCTTTCTTCCAAGGACTTAGTCACATTGTCAGGTGCTCATACAATTGGACAAGCAAGGTGCACAAACTTTAGGGCACGGATCTACAACGAAACCAACATAGATGCTTCATTTGCTAGCACAAGACAATCAAATTGTCCAAGTACATCAGGCTCAGGTGATAACAATTTGGCTCCTCTTGATCTTCAGACCCCCACTTCTTTTGACAACAACTACTTCAAGAATCTTGTTCAAAACAAAGGTCTTCTCCATTCAGACCAACAACTTTTCAACGGTGGCTCCACCAACTCAATAGTGAGTGGCTATAGTACTAATCCAACCTCTTTTTCATCTGATTTTGCTGCTGCTATGATCAAGATGGGAGATATTACTCCTCTTACGGGTTCAAATGGAGAGATTAGGAAGAATTGTAGAAAAACCAACTAA	975	0.4226	MTSLNFSRLTMIMTMSLFVLIIVGSANAQLSTSFYSSSCPKLSSTVQSTMQSAISKEARIGASILRLFFHDCFVNGCDGSILLDDTSNFTGEKNAFPNRNSARGFEVIDNIKTAVENICPGVVSCADILAIAAADSVAILGGPSWNVKLGRRDAKTASQSAANTAIPAPTSNLSTLTSMFSAVGLSSKDLVTLSGAHTIGQARCTNFRARIYNETNIDASFASTRQSNCPSTSGSGDNNLAPLDLQTPTSFDNNYFKNLVQNKGLLHSDQQLFNGGSTNSIVSGYSTNPTSFSSDFAAAMIKMGDITPLTGSNGEIRKNCRKTN	324

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g03082	324	PRINTS	Plant peroxidase signature	188	200	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vifa2g03082	324	PRINTS	Plant peroxidase signature	39	58	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vifa2g03082	324	PRINTS	Plant peroxidase signature	63	83	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vifa2g03082	324	PRINTS	Plant peroxidase signature	242	257	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vifa2g03082	324	PRINTS	Plant peroxidase signature	122	132	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vifa2g03082	324	PRINTS	Plant peroxidase signature	258	275	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vifa2g03082	324	PRINTS	Plant peroxidase signature	103	116	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vifa2g03082	324	PRINTS	Plant peroxidase signature	298	311	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vifa2g03082	324	PRINTS	Plant peroxidase signature	141	156	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vifa2g03082	324	PRINTS	Haem peroxidase superfamily signature	141	153	IPR002016	GO:0004601\|GO:0006979\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g03082	Vifa-Chr2	880699596	880700888	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g03082	28	324	Peroxidase	AT5G05340	77.778	6.84e-175	486

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g03082	K00430		-	gmx:100803637	521.931

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