Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03048 ATGTCGTCTCCCTTCCACCGTCGATCTCAATCGGAGGTACATTTCCGAATCCCCGACGATTTCGACCTCGAAATGGATCCCTTCGACTTCGACGCCTCTCCGCTCCATTTCCAAGATCCACAACCACACGACGATCTCCTCTCTTCCTACATTGATTCCGACAATTCCGGATCCAAACTCAACTCTCCTCCTCCCAATGCAGACACCGGCAGGCCCGGTCACCGCCGTAGCAACTCCGCCGATACATCTTCTTCTATGCTATCAGAAGGAATCGAATCTAAGAAGGCTATGTCCCCTGATAAACTCGCTCAATTGTGGACCGTTGATCCGAAAAGAGCCAAGAGGATTCTGGCTAATCGTCAATCTGCTGCACGTTCGAAAGAGAGGAAAGCTTGTTATGTGGTTGAGCTTGAGAGAAAAATTCATACTCTTCAAACTGAAGCAACAACTCTTTCTGCTCAATTAAATCTTTTCCAGAGAGATACAAGTGGTCTGTCTAGTGAAAATACCGAGTTGAAGCTTCGGTTACAAGGCATGGAGCAACAAGCTAAGTTATGTGATGCTCTAAATGAAGCGTTGAAGAATGAAGTTGATAGGCTGAAGGTTGCTACGGGAGAGGGAACAACCCATGCTGATACATATGGTTTGGGAATGCATCAACTTTCATATTCTCAAGCGTCACCCTTCCTGCACCAGCAACAGCAACATGGTCAGAACGAACTTCGGGCCATGCAAATGCAGCAGTTTCATTCATACTCATCTAACATATCCACTCCCCACCAGCAGCCTCAGTTTGATCTACCCACTTCATATGATTTGTCAGAAATGTTGTCAAGTGATTCTATCGGCCAGTTTCAGGGGCTGGACATTGGCCACAGGGTTTCTCATGTTCTGATGCCTGATGGTCCCTCCATTTCTGTTAATAAAACCAACAACGCCTTTTGA 945 0.4656 MSSPFHRRSQSEVHFRIPDDFDLEMDPFDFDASPLHFQDPQPHDDLLSSYIDSDNSGSKLNSPPPNADTGRPGHRRSNSADTSSSMLSEGIESKKAMSPDKLAQLWTVDPKRAKRILANRQSAARSKERKACYVVELERKIHTLQTEATTLSAQLNLFQRDTSGLSSENTELKLRLQGMEQQAKLCDALNEALKNEVDRLKVATGEGTTHADTYGLGMHQLSYSQASPFLHQQQQHGQNELRAMQMQQFHSYSSNISTPHQQPQFDLPTSYDLSEMLSSDSIGQFQGLDIGHRVSHVLMPDGPSISVNKTNNAF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03048 314 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 5 255 - -
Vifa2g03048 314 MobiDBLite consensus disorder prediction 28 98 - -
Vifa2g03048 314 SMART brlzneu 107 171 IPR004827 GO:0003700|GO:0006355
Vifa2g03048 314 Gene3D - 110 177 - -
Vifa2g03048 314 SUPERFAMILY Leucine zipper domain 111 165 IPR046347 GO:0003700|GO:0006355
Vifa2g03048 314 FunFam probable transcription factor PosF21 110 163 - -
Vifa2g03048 314 Coils Coil 176 196 - -
Vifa2g03048 314 CDD bZIP_plant_RF2 112 161 IPR044759 GO:0003700|GO:0006355
Vifa2g03048 314 MobiDBLite consensus disorder prediction 48 65 - -
Vifa2g03048 314 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 109 172 IPR004827 GO:0003700|GO:0006355
Vifa2g03048 314 Coils Coil 134 154 - -
Vifa2g03048 314 MobiDBLite consensus disorder prediction 72 91 - -
Vifa2g03048 314 Pfam bZIP transcription factor 111 169 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03048 Vifa-Chr2 867617248 867620100 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03048 4 290 bZIP Transcription Factor Family AT2G40620 51.524 7.87e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa2g03048 bZIP_1 8.3e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03048 - - aprc:113852914 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03048 2 867617248 867620100 Vifa2g03048 2 867617248 867620100 ECH