Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03047 ATGGCCATCCGTGAACACCGTCTTTTGCTGGACGCGGATTCAACTTCAAGATCAACAAGTGACATGAATAGGCCAAGAGAGCAATTCACAGCCACAGGTGATTCAAATTTTGACACCAACATGGTTTTTATCTTAGCAGCTTTACTTTGTGCACTTATTTTTGCATTAGGACTTAACACGATTGTAAGGTGTGCTCTAAGATGTAGTCACAGATATGCTTTTGAGACACCAGATGAAACAATTGCTCGTTTAGCTTCTAAGGGTTTAAAGAAGAGTGCTTTGCGTAAGATTCCTATAGCTGTTTATGGTTCAGGAGGTAGTTGTAGTACTAGTTTTGCAGCTACGGATTGTCCAATTTGTCTTGGGGAGTTTGTGGATGGAGAGAAAGTTAGAGTGTTGCCAAAATGTAACCATGGATTTCATGTGAGGTGTATAGATAGATGGCTGCTTTCACACTCCTCTTGTCCTACTTGTAGACAGTCTTTGATTGAGTATCCAAATCCAACTAGTTCTGAAGCTTCATCTCTAGTTGTGAATGTTGTTCCTGTGCCTGCACGAACCTCAAACCAGCGGCTTTAA 579 0.4128 MAIREHRLLLDADSTSRSTSDMNRPREQFTATGDSNFDTNMVFILAALLCALIFALGLNTIVRCALRCSHRYAFETPDETIARLASKGLKKSALRKIPIAVYGSGGSCSTSFAATDCPICLGEFVDGEKVRVLPKCNHGFHVRCIDRWLLSHSSCPTCRQSLIEYPNPTSSEASSLVVNVVPVPARTSNQRL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03047 192 CDD RING-H2_EL5-like 116 159 - -
Vifa2g03047 192 Pfam Ring finger domain 116 159 IPR001841 -
Vifa2g03047 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 164 IPR013083 -
Vifa2g03047 192 SMART ring_2 117 158 IPR001841 -
Vifa2g03047 192 PANTHER RING-H2 FINGER PROTEIN ATL78 21 171 IPR044602 GO:0016567|GO:0016740
Vifa2g03047 192 FunFam RING-H2 finger protein ATL72-like 80 163 - -
Vifa2g03047 192 SUPERFAMILY RING/U-box 111 167 - -
Vifa2g03047 192 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03047 Vifa-Chr2 867114747 867115325 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03047 7 181 C3H Transcription Factor Family AT3G10910 51.613 1.19e-55 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03047 - K19040 mtr:25489830 291.967