Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03045 ATGAATGGGCAAAATGTTGTTACAATGAAGATTTTGGTTGTTTTGACACTTTGGATGTTGCTCGGGCCAAGGAAAACATCAAAGAGATTCCATCTTTTCAAAGTAGAAAACTTCTTTTGGCATAAAGGTTGGTATGAAGAAGAGAGGAGGCAAGCAGATGTGAACTCACTGATGCTGATACTGGCATTGCTATGTCTTTTGCTTCCAATGCTATTTACATACAGTGCTGCATCACCGGAACTCACCGTAGAATCTTCACTCTACTTGTCAAGAGCTGCTAGCATTGTCATGTTGGCTGCATATTTTGTTTACTTGATCTTTCAACTATGGACACATAGGCAACTATTTGAAGCTGAAGATGAAGGCGGAGATGAGAACATTGAGGCAGAAGAGGCTGTGATTGGATTTTGGAGTGGATTTGCTTGGTTGGCTGGAATGACCGTGTTCACTGCGTTGTTGTCTGAATACGTGGTCGATACAATTGAGGATGCATCAGATTCATGGGGTTTATCAGTGAGCTTCCTCAGCATAATCTTGCTTCCAATAGTTGGCAATGCAGCTGAACATGCTGGAGCAATCATTTTTGCTTTCAAGAACAAGCTTGACATTTCCTTAGGTGTTGCATTGGGCTCTGCTACTCAAATTGCCATGTTTGTGGTTCCCCTCTGTGTTACTGTTGCTTGGGGAATGGGAGTGAATATGGACCTAAACTTCAACCTCATTGAGACAGGTTCTCTTGCTGTGGCAATTATAGTCACAAGCTTCACTTTACAGAAAAAATTACAAGCTGCAATTAAGGATTCTGTGTCTGAAAATGAGGCATTTCAGAAAGTATTTGGAAAAGAAAAGCATGGATATGTTCGTAGTATGAGACTTGGAGTTACACCATCTCAAATTAATAGATCTACGAGATCGACATCTTCTTCTGCGGAAAGTGAACAAATAAAGGAAATGCAAGAAGAAATTAATGCACTTAAAGAAAAGAATTCAAAAATTGATGAATTAACACAGGCAATCATATTCTTAACGCAAAGGGACAAGGCGAGGACAAAGGAAAATGAACTCTTAATGCAAATGCAGAATTTTAGTGGAAGACAGGGATTGGAATCACCCGCTGATGGTAGACGTTCATCTGAGTCTAGCTACCGTATTGGAGATAATGGAACTTCAGGGGGGACAAATTAG 1185 0.4034 MNGQNVVTMKILVVLTLWMLLGPRKTSKRFHLFKVENFFWHKGWYEEERRQADVNSLMLILALLCLLLPMLFTYSAASPELTVESSLYLSRAASIVMLAAYFVYLIFQLWTHRQLFEAEDEGGDENIEAEEAVIGFWSGFAWLAGMTVFTALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAMFVVPLCVTVAWGMGVNMDLNFNLIETGSLAVAIIVTSFTLQKKLQAAIKDSVSENEAFQKVFGKEKHGYVRSMRLGVTPSQINRSTRSTSSSAESEQIKEMQEEINALKEKNSKIDELTQAIIFLTQRDKARTKENELLMQMQNFSGRQGLESPADGRRSSESSYRIGDNGTSGGTN 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03045 394 Coils Coil 308 345 - -
Vifa2g03045 394 MobiDBLite consensus disorder prediction 297 317 - -
Vifa2g03045 394 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 48 259 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vifa2g03045 394 MobiDBLite consensus disorder prediction 297 313 - -
Vifa2g03045 394 Pfam Sodium/calcium exchanger protein 139 258 IPR004837 GO:0016020|GO:0055085
Vifa2g03045 394 Gene3D - 5 269 IPR044880 -
Vifa2g03045 394 MobiDBLite consensus disorder prediction 362 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03045 Vifa-Chr2 866852563 866855912 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03045 48 260 Antiporters AT3G51860 69.683 4.00e-88 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03045 K07300 - gmx:100816231 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03045 2 866852563 866855912 Vifa2g03045 2 866852563 866855912 ECH
Vifa2g03045 2 866852563 866855912 Vifa1g00870 1 146929110 146933407 PCT