Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03044 ATGGGGAACTCTTGTGTTGGTCCTAGCATTTCAAAGAATGGTATTATTCAATCGTTTTCGGCTGCGATTTGGCGTACTCACTTACCTGAACCTGAAGGATCAGTGGCGAATAGAGGTTCTGTAAATGATGTAGCAACTGATAATGAACCTGAATCTCCGTTGCCTGTCCAAAACAAACCTCCTGAGCAGATAACTATACCAAAGCCGGATGCAAAACAAGAGAGCGAATCCGAAAAGGAACCTGAAAAGGAAAAGAAGAAAGAAAGGAAACCTTCTGTGAAGAGAAGTTCTAGTGCTGGACTTGGTGTTGATTCAGTGTTGCAGAGGGAAACTGGTAATTTCAAGGACTATTTTAGTCTAGGGGAAAAACTCGGACAAGGTCAGTTTGGGGTGACATTCTTGTGTATTGAGAAAGAAACCGGGAGGCAGTATGCTTGTAAATCTATTGCCAAGAGGAAGCTTGTGACCGACGATGATGTTGAGGATGTGAGAAGAGAAATTCAGATAATGCACCATTTAATGTTATATCCATCAAAGCGTGGACATTATACCGAAAGAAAGGCTGCTGAACTTATCAGGACTATTGTTGGGGTTGTTGAAGCTTGTCATTCTCTTGGTGTCATGCATAAAGACCTTAAACCTGAGAATTTTCTATTCGTCAATCAGCAAGAAGATTCGCTACTCAAAACTATTGACTTTGGATTGTCCGTGTTCTTTAAGCCAGGTGATACATTTATCGATGTGGTTGATGTTTGGAGTGCTGGTGTTATCCTTTACATTCTTTTGAGTGGAGTACCTCCATTTTGGGCTGAAAACGAACAAGGCATATTCGAACAGGTTTTTCACGGTGATCTTGACTTCGCTTCAGATCCATGGCCTGCAATTTCTGAAAGTGCAAAAGATTTAGTAAGGAAAATGCTTGTTCGTGACCCTAGAAGACGGATGACTGCGTATCAAGTATTATGTCATCCTTGGGTTCAAGTTGATGGTGTAGCTCCTGACAAACCACTTGATTCCGCCGTATTAAGTCGCTTGAAGCAATTTTCTGCTATGAACAAGCTTAAGAAAATGGCTCTTATAGTCATTGCAGAGAGCTTATCAGAAGAAGAATTAGCTGGCTTAAAAGAAATGTTCAAGATGTTAGACACAGATAACAGCGGTCAAATTACTTTTGAAGAACTTAAAGTCGGTTTGAAAAAAGTTGATGCAAATCTTAAGGAGTCTGAAATTTATGATTTAATGCAAGCGGCTGATATAGATAACAGTGGAACGATTGATTACGGTGAGTTCATTGCGGCAACATTGCATCTTAACAAAGTTGAAAGAGAAGATCATCTATTTGCAACTTTTTCTTACTTTGATAAAGATGGAAGTGGCTATATTACTCAAGAAGAACTTCAACAAGCGTGTGATGAGTTTGGCATAAAAGATGTTGGGTTGGACGAAATAATCAAGGAAATTGATGAAGATAATGAAACAAAATTCTCCTGTTTTGATGACGCGTTGGCTTGGTCGTTTTGGGGTAACAAAGAGGTTGAATGGACTGTTTGTAATTCCAGGGGAGCGTCAGAAGGTATCAATGTTGGGTGGAAGGGAGGAGTGTACAATTCTGTTAATGTTTATGTTCCTAGTTTTGTGGTCGAGAGAAGAACCTTATGGAGTAGTTTGATTAATAGAAAGCGGGGTAGCATTAATGAAGATTGGTGTTTTGGTGTAGATTTCAATGATGTTTGTTGTAGGGAGGAGATATTGGGCATATGCGAGAATCACAGTAGGAGGAATATGGAGGAGTTCAGAAATTTTATAGAGGACATGAACTTGGTGGATCTACCAAGTGTGGGGAGTAGGTTCACTTGGTTTAAAGGTAACTGA 1872 0.3985 MGNSCVGPSISKNGIIQSFSAAIWRTHLPEPEGSVANRGSVNDVATDNEPESPLPVQNKPPEQITIPKPDAKQESESEKEPEKEKKKERKPSVKRSSSAGLGVDSVLQRETGNFKDYFSLGEKLGQGQFGVTFLCIEKETGRQYACKSIAKRKLVTDDDVEDVRREIQIMHHLMLYPSKRGHYTERKAAELIRTIVGVVEACHSLGVMHKDLKPENFLFVNQQEDSLLKTIDFGLSVFFKPGDTFIDVVDVWSAGVILYILLSGVPPFWAENEQGIFEQVFHGDLDFASDPWPAISESAKDLVRKMLVRDPRRRMTAYQVLCHPWVQVDGVAPDKPLDSAVLSRLKQFSAMNKLKKMALIVIAESLSEEELAGLKEMFKMLDTDNSGQITFEELKVGLKKVDANLKESEIYDLMQAADIDNSGTIDYGEFIAATLHLNKVEREDHLFATFSYFDKDGSGYITQEELQQACDEFGIKDVGLDEIIKEIDEDNETKFSCFDDALAWSFWGNKEVEWTVCNSRGASEGINVGWKGGVYNSVNVYVPSFVVERRTLWSSLINRKRGSINEDWCFGVDFNDVCCREEILGICENHSRRNMEEFRNFIEDMNLVDLPSVGSRFTWFKGN 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03044 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Vifa2g03044 623 SUPERFAMILY EF-hand 355 495 IPR011992 -
Vifa2g03044 623 Gene3D - 352 494 - -
Vifa2g03044 623 FunFam Calcium-dependent protein kinase SK5 242 331 - -
Vifa2g03044 623 FunFam Calcium-dependent protein kinase 1 334 502 - -
Vifa2g03044 623 Gene3D Transferase(Phosphotransferase) domain 1 176 327 - -
Vifa2g03044 623 ProSiteProfiles EF-hand calcium-binding domain profile. 441 476 IPR002048 GO:0005509
Vifa2g03044 623 ProSiteProfiles EF-hand calcium-binding domain profile. 369 404 IPR002048 GO:0005509
Vifa2g03044 623 CDD STKc_CAMK 118 325 - -
Vifa2g03044 623 Pfam EF-hand domain pair 374 434 IPR002048 GO:0005509
Vifa2g03044 623 ProSitePatterns EF-hand calcium-binding domain. 382 394 IPR018247 -
Vifa2g03044 623 SMART efh_1 445 473 IPR002048 GO:0005509
Vifa2g03044 623 SMART efh_1 409 437 IPR002048 GO:0005509
Vifa2g03044 623 SMART efh_1 373 401 IPR002048 GO:0005509
Vifa2g03044 623 CDD EFh 374 433 IPR002048 GO:0005509
Vifa2g03044 623 SMART serkin_6 118 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03044 623 Pfam EF-hand domain 446 471 IPR002048 GO:0005509
Vifa2g03044 623 Gene3D Phosphorylase Kinase; domain 1 107 175 - -
Vifa2g03044 623 ProSitePatterns EF-hand calcium-binding domain. 418 430 IPR018247 -
Vifa2g03044 623 MobiDBLite consensus disorder prediction 69 94 - -
Vifa2g03044 623 ProSitePatterns Protein kinases ATP-binding region signature. 124 151 IPR017441 GO:0005524
Vifa2g03044 623 SUPERFAMILY Protein kinase-like (PK-like) 106 347 IPR011009 -
Vifa2g03044 623 PANTHER SERINE/THREONINE-PROTEIN KINASE 109 173 - -
Vifa2g03044 623 ProSiteProfiles EF-hand calcium-binding domain profile. 405 440 IPR002048 GO:0005509
Vifa2g03044 623 SUPERFAMILY DNase I-like 507 621 IPR036691 -
Vifa2g03044 623 MobiDBLite consensus disorder prediction 39 53 - -
Vifa2g03044 623 Pfam Protein kinase domain 119 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03044 623 Pfam Protein kinase domain 178 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03044 623 Pfam Protein kinase domain 249 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03044 623 Gene3D - 342 435 - -
Vifa2g03044 623 MobiDBLite consensus disorder prediction 30 104 - -
Vifa2g03044 623 ProSitePatterns EF-hand calcium-binding domain. 454 466 IPR018247 -
Vifa2g03044 623 ProSiteProfiles Protein kinase domain profile. 118 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03044 Vifa-Chr2 866829630 866845830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03044 1 495 EF-hand Containing Proteins AT5G04870 63.966 0.0 727
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa2g03044 Pkinase 7.1e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03044 K13412 - gmx:100797449 759.214