Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03039 ATGTCCTCCGACGACATCAATCTCGATCCCGATCAAAGAATCGATAACGGCCTCACTCCCCCCCTCGTCTTCCAAGACGACACCTTACGCTTCAACTGCGACGCTGCACCACCGCGGCAGGTCGGAGATCCGGTTCTTAAACCCCGGGAAGCTGGTGGTTTCATCGAGGACAAGATGTTCACCGTAAATCGAGATCGCTTTTTCACCTCCCAGGGCGCCGAGTTCCGCCGTAACGTTTTTGCTGATCGCGCCGACCACAGGGACACTTCAGATGTACTGAATTGGAGCGCCGGAACTCCCAGCAGCGACGATTCGGACGGTGAAGACGATGAAGACGACGATGAAGGCGACGAAGGTGACACTGTAGTAGACACACTCGTCAGTGTTGGCGATGGGAGCAACCGGAGTTCAAATGCAATTATTGACGTTAACAATAACAACGGTGGTGGTGTTGTAATCGGAAAACCCCAGTATAATTCCCCTTATGTTTCTGGTAGAGAGGTGTTGGGAAAGGACGGTGAGATTGTACAGATGGTGCATAACCATTCCAGTGGTACTGTTGGTGAAGATCATCGAGAAAGATTAGGGAAAACTCAGAACTCTGCAACTGTTGCTGAAACTGATTGTGAGGAGTATTATTCCCATTATCTTCAAGGTGCGGAAGGGTCTGCTTCTGTACAGAAAGTTATGTTGGATGACAATGGTTGTGGGTTTAGTGGAAGAAAGGATGCTGTTTATTCAAGTGAGTCTGGGGAGTCATTGAGGGCAATTCTTTCTGATCCTGTTACTGGAACTCTTATGGATGATGCAATGATATTACCTTGTGGACATTCTTTTGGTGGAGGTGGAGTACAACATGTTATTAGAATGAAAGCTTGTTGTACTTGCTCTCAACCCACACTGGAGGAATCAATATCTCCAAATCTTTCACTCCAAGCTGCTGTGCAGGCGTACCGTCGGGAAGAGGAATCACAATTTTACCGGTCATCCAAAAGAAGAAGAGAAAGATTTGATCAGGGTGGTTTAGGAGAGAGTGCTGTTTTTGAACCACCTAGGAGCAGAGGAGTTCAATTTCCATTTGCTGTGAGGGACAGAGTTATCATAAAGGGGAACAAAAGGACACCACTGCGCTTTGTTGGAAGGGAAGCTATTGTAACAACACAATGCCTGAATGGATGGTATGTGGTGAAGACATTGGACAATGCAGAGAGTGTAAAATTGCAGTATCGCTCCCTTGCTAAGGTCTCTGAGGATCCTTCAAAACTTGTCTCCAGCAACAAGGGACCTAATTGGCTTCAGATCAGCCGCACTCCATCATAA 1320 0.472 MSSDDINLDPDQRIDNGLTPPLVFQDDTLRFNCDAAPPRQVGDPVLKPREAGGFIEDKMFTVNRDRFFTSQGAEFRRNVFADRADHRDTSDVLNWSAGTPSSDDSDGEDDEDDDEGDEGDTVVDTLVSVGDGSNRSSNAIIDVNNNNGGGVVIGKPQYNSPYVSGREVLGKDGEIVQMVHNHSSGTVGEDHRERLGKTQNSATVAETDCEEYYSHYLQGAEGSASVQKVMLDDNGCGFSGRKDAVYSSESGESLRAILSDPVTGTLMDDAMILPCGHSFGGGGVQHVIRMKACCTCSQPTLEESISPNLSLQAAVQAYRREEESQFYRSSKRRRERFDQGGLGESAVFEPPRSRGVQFPFAVRDRVIIKGNKRTPLRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSEDPSKLVSSNKGPNWLQISRTPS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03039 439 MobiDBLite consensus disorder prediction 1 21 - -
Vifa2g03039 439 MobiDBLite consensus disorder prediction 91 138 - -
Vifa2g03039 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 323 IPR013083 -
Vifa2g03039 439 ProSiteProfiles U-box domain profile. 253 325 IPR003613 GO:0004842|GO:0016567
Vifa2g03039 439 MobiDBLite consensus disorder prediction 103 121 - -
Vifa2g03039 439 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 61 422 - -
Vifa2g03039 439 SUPERFAMILY RING/U-box 252 324 - -
Vifa2g03039 439 MobiDBLite consensus disorder prediction 420 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03039 Vifa-Chr2 864379260 864383578 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03039 201 432 Plant U-box Gene Family AT5G05230 61.088 1.21e-86 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03039 - - gmx:100791099 542.347