Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03038 ATGAGCGCACCTCCTATTTCCATTTTCTTAATGGATCAGGAAAGGCTTCGTAATTTTATCATTTGGGCAATTACAACTGCGTTAGCGTCGGATTCTGCACAAAGAAAATACCTCAGAGCAAAGACAGATCCAGATGATTACTGCTTTACTTATTCAATTCATTGTAGTGCTAACCTTCCTGATTCTTTAAGACAAGCATCGAGTAGTAATTCTGTATTGGAAATCCCGCGACTTGCAAGTGTAAAGACTCAGGATGCTTCTGAATTGAAATCCACAATGGAGAATCTTGTTACTGATTTATTGACCACTCTAAATTTACCTGAATATCCTGCTTCAGCTTCTATTCTAGAGGTTCTATGTGCCATACTAATTCAGAATGATGGGACAAGTTCCAAGGATTTTGCTTCACGTTCCATGGCAATTGATATTCTTGGCACTATTGTGGCAAGGTTGAAGCATGATGCTATGATTTGTAGCCAGGAAAAGTTTTGGGTACTTCAAGATTTACTTAGTAAGGATGTTGCTCCTCAGAATTATCCGAAAGATACATGTTGTGTCTGTTTGGGTGGAAGGGCTGAAAATTTGTTCCCATGTTCCGGTTGCAATAGGCTTTTTCATACTGAATGCCTGGACATTGAAGAAGATGAAGTTCTCAATCAGAACTGGTACTGTCACATGTGCATCTGCTCAAAGCAACTGGCTGCTGAAGGAATCATTTGTAGGACAGAAGCTTGA 735 0.3973 MSAPPISIFLMDQERLRNFIIWAITTALASDSAQRKYLRAKTDPDDYCFTYSIHCSANLPDSLRQASSSNSVLEIPRLASVKTQDASELKSTMENLVTDLLTTLNLPEYPASASILEVLCAILIQNDGTSSKDFASRSMAIDILGTIVARLKHDAMICSQEKFWVLQDLLSKDVAPQNYPKDTCCVCLGGRAENLFPCSGCNRLFHTECLDIEEDEVLNQNWYCHMCICSKQLAAEGIICRTEA 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03038 244 ProSiteProfiles Zinc finger PHD-type profile. 181 230 IPR019787 -
Vifa2g03038 244 SUPERFAMILY FYVE/PHD zinc finger 179 236 IPR011011 -
Vifa2g03038 244 SMART PHD_3 183 228 IPR001965 -
Vifa2g03038 244 Pfam PHD-finger 184 229 IPR019787 -
Vifa2g03038 244 ProSitePatterns Zinc finger PHD-type signature. 184 227 IPR019786 -
Vifa2g03038 244 PANTHER NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED 76 173 IPR033031 GO:0003682|GO:0010468|GO:0061780
Vifa2g03038 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 239 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03038 Vifa-Chr2 863876652 863877671 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa2g03038 PHD 3.9e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03038 K06672 - gmx:100792021 259.996