Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03035 ATGGAAACTTCATTAAACGTTATGAGAGTTTTTCTCGTGCTCTTGCTCTTGCTGTTTCTGGTGACGGTGACAGCTGTTAGCCCCTCTTTAAACGACGACGTTTTGGGGTTGATTGTGTTCAAAGCGGATATACAAGATCCAAAGGGAAAGTTAGCATCTTGGAATGAAGATGATGAAAGTGCTTGCAGTGGTAGTTGGGTTGGAGTGAAATGCAACGCTAGATCTAACAGAGTGGTGGAGGTTAACCTGAATGGGTTTTCTTTATCTGGGAGAATTGGTCGTGGGTTGCAGCGTTTGCAGTTTCTTCGGAGGCTTTATTTGGGGAATAACAATCTTACAGGGAGTGTTACTCCTAATATTGCTACTATTGATAACCTTAGGGTTCTTGATTTGAGTAATAATAATCTTTCGGGTGTTGTTCCTGATGATTTTTTTCGACAATGTGGGTCGATGAGAGTTGTTTCTTTGGCCGGGAATTTGTTTTCGGGGAACATACCTTCTAGTTTAGGGTCATGTTCAGCTGTTGCTAATGTTGACCTTTCTGGTAACCAGTTTGTTGGTAATGTTCCTAAGGAGATTTGGAGTTTGAGTGGACTTAGGTCTCTTGATTTCTCTGATAATTTGTTGGAAGGTGAGATTCCGGAAGGTGTTGAGGCGTTGAAGAATTTGAGAAGTATTAACTTAGCTAGAAATAGCTTTTTTGGGAAGATACCTTATGGGTTCGGAAGTTGTTCGCTTTTGAGGTCTATTGATTTTGGTGAGAATTCTTTCTCCGGTAGTGTACCTAGTGATTTGAAGGATTTGGTGTTGTGTGGTTACTTTAGTTTGCGTGGAAACGCCTTCTCAGGAGATCTTCCTGAGTGGATTGGAGAGATGAATGGTCTTCAGACATTAGATCTTTCACGGAATAGATTTTCTGGTTTGGTGCCGAACTCTTTAGGGAAACTTTGGTTAATGAAAACATTGAATCTTTCTGGAAATGGCTTCACTGGCAATCTTCCCGAGTCCATGGTGAATTGCACAAGCCTTTTGGCTTTGGATGTTAGCCAAAATTCATTGTCTGGAGATCTTCCTTCTTGGATTTTCGGGTCGGATTTGGATTTGGAGAAGGTATCGGTGGCAGATAACAAAATGAGTGGTAGGGTGAAAAGCCCTTTGTATTCCTTGACTGAAGTTGTGGTTCAGAGTCTTCAAGTTTTGGATTTGTCTCACAATGCATTTTCTGCTTCAATCGGTGATTTGAAAACATGTTCTAGTCTTGATTTGAGTTATAATAAGCTAAACGGAAGCATACCTCAGGAAATTGGGGGAGCTCTTTCCTTGAAAGAACTTATTTTGGGAAACAACTTCCTTATTGGGAAAATCCCAATTTCAATTGAGAACTGCTCTTCATTAACAACTTTGATTCTGTCGAAGAACAAGCTGAGTGGGTCAATACCAGCAGCAGTTGCAAAACTCTCCGGCTTGAAAACTGTGGACATATCATTCAACTACCTTAATGGAAGCCTTCCTAAACAATTGGCTAACCTTCCCAATCTCTTGACCTTCAATTTATCTCACAATAACCTTCGGGGCGAACTGCCGGCTGGTGGTTTCTTTAACACCATTTCGCCTTCCTCCGTTTCTGGCAATCCATTTCTTTGTGGGTCTGTTGTCAACAAAAAATGCCCTGTTAAGCTCCCAAAGCCTATTGTTCTGAATCCCAACTTTTCTGGTGACTCTGACCCAGGTTCGCCTACTCCAATGTCGGGTCACAAGAGAAATATTCTCAGCATTTCAGCACTCATTGCCATTGGTGCAGCTGCTTTCATTGTAATTGGTGTCATTGGCATCACTGTTCTCAACCTCCGTGTTCGGTCCGCCACATCTCGATCTCCAGTGGCCCTTGATTTTTCTGCAGGGGATGATTATAGTCGTTCACCAACCACAGATGCCAACTCTGGCAAGCTTGTCATGTTTTCAGGTGAACCTGATTTTAGCTCTGGTGCACATGCTTTGCTTAACAAAGATTGCGAGCTTGGGCGTGGAGGATTTGGTGCTGTGTACCAAACAGTACTAGGAGACGGTCGCTCAGTTGCTATAAAGAAACTCACTGTGTCGAGCCTTGTTAAGTCACAAGAAGATTTCGAGAGGGAAGTTAAGAAATTGGGAAAAGTCAGACACCAAAATCTTGTTGAACTCGAAGGCTATTATTGGACTTCATCACTTCAACTCCTCATATATGAGTTTGTCTCTCGCGGTAGCCTTTACAAACATCTCCACGAAGGATCAGGCGAAAACTTCCTAACATGGAACGAAAGGTTTAACGTCATTCTCGGGTCGGCGAAGGCCTTAGCTCACTTGCACCACTCCAACATTATTCACTACAACATTAAGTCAACCAACATCCTCATCGATAGCTATGGTGAACCTAAAGTAGGCGATTACGGCCTAGCAAGGCTGCTACCAATGCTCGACCGCTACGTTTTGAGCAGCAAAATTCAAAGCGCACTCGGCTACATGGCACCAGAGTTTGCCTGCAAAACAGTGAAAATCACCGAGAAATGTGATGTTTACGGATTCGGAGTTTTGGTTTTGGAGATTGTGACAGGTAAAAGGCCTGTAGAGTATATGGAGGATGATGTTGTTGTACTTTGTGACATGGTTAGAGGAGCATTGGATGAAGGAAGAGTAGAGGAATGTATTGATGAGAGGCTACTAGGGAAGTTTCCAGTAGAAGAAGTGATTCCTGTGATTAAGCTTGGTTTGGTATGTACTTCACAAGTGCCATCTAATAGGCCAGAAATGGGAGAGGTAGTAACCATATTGGAGCTTATAAGATGCCCTTCAGAAGGACAAGAAGAGTTGTTGGGATGA 2856 0.4275 METSLNVMRVFLVLLLLLFLVTVTAVSPSLNDDVLGLIVFKADIQDPKGKLASWNEDDESACSGSWVGVKCNARSNRVVEVNLNGFSLSGRIGRGLQRLQFLRRLYLGNNNLTGSVTPNIATIDNLRVLDLSNNNLSGVVPDDFFRQCGSMRVVSLAGNLFSGNIPSSLGSCSAVANVDLSGNQFVGNVPKEIWSLSGLRSLDFSDNLLEGEIPEGVEALKNLRSINLARNSFFGKIPYGFGSCSLLRSIDFGENSFSGSVPSDLKDLVLCGYFSLRGNAFSGDLPEWIGEMNGLQTLDLSRNRFSGLVPNSLGKLWLMKTLNLSGNGFTGNLPESMVNCTSLLALDVSQNSLSGDLPSWIFGSDLDLEKVSVADNKMSGRVKSPLYSLTEVVVQSLQVLDLSHNAFSASIGDLKTCSSLDLSYNKLNGSIPQEIGGALSLKELILGNNFLIGKIPISIENCSSLTTLILSKNKLSGSIPAAVAKLSGLKTVDISFNYLNGSLPKQLANLPNLLTFNLSHNNLRGELPAGGFFNTISPSSVSGNPFLCGSVVNKKCPVKLPKPIVLNPNFSGDSDPGSPTPMSGHKRNILSISALIAIGAAAFIVIGVIGITVLNLRVRSATSRSPVALDFSAGDDYSRSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLGDGRSVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVELEGYYWTSSLQLLIYEFVSRGSLYKHLHEGSGENFLTWNERFNVILGSAKALAHLHHSNIIHYNIKSTNILIDSYGEPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGALDEGRVEECIDERLLGKFPVEEVIPVIKLGLVCTSQVPSNRPEMGEVVTILELIRCPSEGQEELLG 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03035 951 Pfam Leucine rich repeat N-terminal domain 31 72 IPR013210 -
Vifa2g03035 951 SUPERFAMILY L domain-like 395 549 - -
Vifa2g03035 951 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 31 311 - -
Vifa2g03035 951 ProSiteProfiles Protein kinase domain profile. 667 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03035 951 ProSiteProfiles Leucine-rich repeat profile. 125 146 IPR001611 GO:0005515
Vifa2g03035 951 FunFam Leucine-rich repeat receptor-like protein kinase PXC2 363 559 - -
Vifa2g03035 951 Pfam Protein tyrosine and serine/threonine kinase 669 876 IPR001245 GO:0004672|GO:0006468
Vifa2g03035 951 Pfam Leucine Rich Repeat 222 244 IPR001611 GO:0005515
Vifa2g03035 951 Pfam Leucine Rich Repeat 125 144 IPR001611 GO:0005515
Vifa2g03035 951 Pfam Leucine Rich Repeat 440 462 IPR001611 GO:0005515
Vifa2g03035 951 Gene3D Phosphorylase Kinase; domain 1 661 743 - -
Vifa2g03035 951 Gene3D Transferase(Phosphotransferase) domain 1 744 948 - -
Vifa2g03035 951 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 661 743 - -
Vifa2g03035 951 CDD STKc_IRAK 673 939 - -
Vifa2g03035 951 Gene3D Ribonuclease Inhibitor 271 559 IPR032675 -
Vifa2g03035 951 ProSitePatterns Protein kinases ATP-binding region signature. 673 696 IPR017441 GO:0005524
Vifa2g03035 951 PRINTS Leucine-rich repeat signature 394 407 - -
Vifa2g03035 951 PRINTS Leucine-rich repeat signature 126 139 - -
Vifa2g03035 951 SUPERFAMILY RNI-like 81 408 - -
Vifa2g03035 951 ProSiteProfiles Leucine-rich repeat profile. 396 418 IPR001611 GO:0005515
Vifa2g03035 951 Pfam Leucine rich repeat 275 328 IPR001611 GO:0005515
Vifa2g03035 951 Pfam Leucine rich repeat 464 523 IPR001611 GO:0005515
Vifa2g03035 951 SUPERFAMILY Protein kinase-like (PK-like) 670 942 IPR011009 -
Vifa2g03035 951 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 744 945 - -
Vifa2g03035 951 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 278 939 - -
Vifa2g03035 951 Gene3D Ribonuclease Inhibitor 30 270 IPR032675 -
Vifa2g03035 951 SMART LRR_typ_2 510 534 IPR003591 -
Vifa2g03035 951 SMART LRR_typ_2 99 122 IPR003591 -
Vifa2g03035 951 SMART LRR_typ_2 292 315 IPR003591 -
Vifa2g03035 951 SMART LRR_typ_2 196 220 IPR003591 -
Vifa2g03035 951 SMART LRR_typ_2 123 146 IPR003591 -
Vifa2g03035 951 SMART LRR_typ_2 394 417 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03035 Vifa-Chr2 863686032 863689522 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03035 10 949 Receptor kinase-like Gene Family AT3G56370 64.403 0.0 1188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vifa2g03035 PK_Tyr_Ser-Thr 6.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03035 - - mtr:25489825 1580.84