Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03030 ATGGCTTCTGCTTCATCTTCATCTTCTTCTACAAATTGGATCATGGAAAGTGGTGAGATTCCTCATGTTCTTGCTGTTGATGATAGTCTTATTGATCGCAAACTTGTTGAGAAACTCCTTAGAAATTCCTCTTGCAGAGTTACAACTGCTGAAAATGGACTAAGGGCATTGGAGTTGTTGGGCTTGACAAATGGTGAACACAGCACCTTGAATGGAAGATCTAAAGTAAACTTAATCATCACAGACTATTGCATGCCAGGGATGACAGGCTATGAGTTACTCAAGAAAATCAAGGAATCATCTGTAATGAGAGAGGTCCCGGTAGTAATCATGTCATCTGAGAACATACCAACAAGAATCAACAAGTGTCTGGAAGAAGGAGCTGAAATGTTCATGTTAAAGCCACTAAAAGAGTCTGATGTAAGAGAACTGACATGTCAGTTAATGAATCTAGGAAGGTGA 462 0.3961 MASASSSSSSTNWIMESGEIPHVLAVDDSLIDRKLVEKLLRNSSCRVTTAENGLRALELLGLTNGEHSTLNGRSKVNLIITDYCMPGMTGYELLKKIKESSVMREVPVVIMSSENIPTRINKCLEEGAEMFMLKPLKESDVRELTCQLMNLGR 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03030 153 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 148 IPR045279 GO:0009736
Vifa2g03030 153 ProSiteProfiles Response regulatory domain profile. 22 149 IPR001789 GO:0000160
Vifa2g03030 153 SMART REC_2 21 145 IPR001789 GO:0000160
Vifa2g03030 153 Gene3D - 22 153 - -
Vifa2g03030 153 FunFam Two-component response regulator ORR5 21 151 - -
Vifa2g03030 153 SUPERFAMILY CheY-like 22 150 IPR011006 -
Vifa2g03030 153 Pfam Response regulator receiver domain 23 143 IPR001789 GO:0000160
Vifa2g03030 153 CDD REC_typeA_ARR 23 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03030 Vifa-Chr2 861953287 861954277 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03030 22 150 Response Regulator Gene Family AT3G56380 72.519 6.73e-63 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa2g03030 Response_reg 1.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03030 K14492 - gmx:100499827 256.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01191 1 193548746 193549519 Vifa2g03030 2 861953287 861954277 PCT