Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03019 ATGAGTGATGTTGTTGTTTCTTCCAAGAAGAAGTTGCTCATTAAGGAGCTTCTTCAGGGTCAAGAGTATGCTACTCAGCTGAAGTTTCTGCTTAAGAATCATGTTGGTTTTGGTTCTGATGGGTCTGCTTCGGTTAAGGAATTGGCAGCTAATGTGCTGAGATCTTTCTCTCAGACTATTTCTGTGATGACTTCTGACGGTTGTAATTTTGATGAGGTAGAAGAAACCGGTTCTTTGGTGTTTGCTTTATGTAATGATGATGTGAAATCTGAAGATTCAAGTGAGAGTAAGAAGAGATTGTTGTCTAACACAAAAGATAGAAGAGGTTCCTACAAAAGAAGCAGGAAGACTGATGAGACAAGAACTATTGTTTCTAAAACAACTGGTGACATTCATTCCTGGAGAAAGTACGGACAGAAGGAAATCCTCAATTCTCAATTTCCTAGGAGCTACTTTAGATGTACCCGGAAGCATGATCAAGGTTGCAGAGCAACCAAACAGGGTTCCCCTATTGTTAGCTCAGAAAGACCAATTGTGAAACAAGAGTATCCGATCAATGACGACATTACTACTACTCCGAGGAGTGTTCTTGCGGACGATTTATTCGATGCTAACTTGTGGTCTGATTTTAAGGATTTTGAACTATCCAAGCCAGATACTAGTGTGTATTCATGTAGTGAATCTCAAAACCTTGAAATTGGTTTTGGGGTGTTTTCTGATTTCAGCAATGATTTAGTGTATTTTGATGAAAGGCATTTGCTATAA 765 0.3895 MSDVVVSSKKKLLIKELLQGQEYATQLKFLLKNHVGFGSDGSASVKELAANVLRSFSQTISVMTSDGCNFDEVEETGSLVFALCNDDVKSEDSSESKKRLLSNTKDRRGSYKRSRKTDETRTIVSKTTGDIHSWRKYGQKEILNSQFPRSYFRCTRKHDQGCRATKQGSPIVSSERPIVKQEYPINDDITTTPRSVLADDLFDANLWSDFKDFELSKPDTSVYSCSESQNLEIGFGVFSDFSNDLVYFDERHLL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03019 254 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 167 IPR044810 GO:0003700
Vifa2g03019 254 Pfam WRKY DNA -binding domain 130 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g03019 254 SMART WRKY_cls 128 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g03019 254 Gene3D WRKY domain 112 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g03019 254 ProSiteProfiles WRKY domain profile. 130 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g03019 254 MobiDBLite consensus disorder prediction 94 121 - -
Vifa2g03019 254 SUPERFAMILY WRKY DNA-binding domain 126 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03019 Vifa-Chr2 859837126 859838576 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03019 8 167 WRKY Transcription Factor Family AT3G56400 44.578 1.99e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa2g03019 WRKY 1.9e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03019 - - tpra:123913408 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01059 1 174357944 174377687 Vifa2g03019 2 859837126 859838576 PCT