Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03018 ATGAGTGATGTTGTTGTTTCTTCCAAGAAGAAGTTGCTCATTAAGGAGCTTCTTCAGGGTCAAGAGTATGCTACTCAGCTGAAGTTTCTGCTTAAGAATCATGTTGGTTTTGGTTCTGATGGGTCTGCTTCGGTTAAGGAATTGGCAGCTAATGTGCTGAGATCTTTCTCTCAGACTATTTCTGTGATGACTTCTGACGGTTGTAATTTTGATGAGGTAGAAGAAACCGGTTCTTTGGTGTTTGCTTTATGTAATGATGATGTGAAATCTGAAGATTCAAGTGAGAGTAAGAAGAGATTGTTGTCTAACACAAAAGATAGAAGAGGTTCCTACAAAAGAAGGAAGACTGATGAGACAAGAACTATTGTTTCTAAAACAACTGGTGACATTCATTCCTGGAGAAAGTACGGACAGAAGGAAATCCTCAATTCTCAATTTCCTAGGAGCTACTTTAGATGTACCCGGAAGCATGATCAAGGTTGCAGAGCAACCAAACAGGGTTCCCCTATTGTTAGCTCAGAAAGACCAATTGTGAAACAAGAGTATCCGATCAATGACGACATTACTACTACTCCGAGGAGTGTTCTTGCGGACGATTTATTCGATGCTAACTTGTGGTCTGATTTTAAGGATTTTGAACTATCCAAGCCAGATACTAGTGTGTATTCATGTAGTGAATCTCAAAACCTTGAAATTGGTTTTGGGGTGTTTTCTGATTTCAGCAATGATTTAGTGTATTTTGATGAAAGGCATTTGCTATAA 762 0.3885 MSDVVVSSKKKLLIKELLQGQEYATQLKFLLKNHVGFGSDGSASVKELAANVLRSFSQTISVMTSDGCNFDEVEETGSLVFALCNDDVKSEDSSESKKRLLSNTKDRRGSYKRRKTDETRTIVSKTTGDIHSWRKYGQKEILNSQFPRSYFRCTRKHDQGCRATKQGSPIVSSERPIVKQEYPINDDITTTPRSVLADDLFDANLWSDFKDFELSKPDTSVYSCSESQNLEIGFGVFSDFSNDLVYFDERHLL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03018 253 SMART WRKY_cls 127 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g03018 253 ProSiteProfiles WRKY domain profile. 129 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g03018 253 Gene3D WRKY domain 103 182 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g03018 253 Pfam WRKY DNA -binding domain 129 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g03018 253 MobiDBLite consensus disorder prediction 94 119 - -
Vifa2g03018 253 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 166 IPR044810 GO:0003700
Vifa2g03018 253 SUPERFAMILY WRKY DNA-binding domain 125 168 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03018 Vifa-Chr2 859837126 859838576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03018 8 166 WRKY Transcription Factor Family AT3G56400 44.848 3.84e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa2g03018 WRKY 1.9e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03018 - - tpra:123913408 244.202