Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03016 ATGATCCTCCGTTTATACATATTTCCCCTCGTTATTTCCCGTTCCTTTCTTTTCTTTCTCTTCACTTCCAACACAGCCGCAGCCGCAGAAAACAACATCAACAAGTACCATTCTGAAAGTGGCTGGGTTCGATGGAGAAAGAGTTGGTGGAATTATAGCCCGCACGAAGAAAGCCGATGCCTTGATGCGCTCGAGCAGCTCAAGAAATTTCCTGTTAATTATCAAATTCTCGTTAATACCCAGGTGGGAAGACATCTTAAAAGTCTCACCAAGCACCCCAGGCAGAAAATTCGGGCTTTTGCTGTTGACTTAATTGAGATATGGAAAGGCATAATTATCAAGGAAACAAGTAAAAATAAATCTGGGCCCTCAGATTCTAAGGCTGAGTCAACAAATGGGGAGAGAGCTAAAGCTGGGAAATTACAAAAGAGTCCTTCAGTGAAGGTTGAGAAAGGAGAAAGTGTCAAAGTGGAAAAAGTTAATGGGAATGGTACATCAGAGCTGAGCTCTGGAAATGTAAAGGCACAAAATGTGGATGTCAAAATTGAGAAAACTGATCGTTCTTCAAGCATCAAGGTGGAAAAGATAGCCAAGGAGGAAACACATGTTTCGGTAGCAAAGAAAATTTCATCCAGCTCTGCTGCTCCTCCAAAGCTGAAGACTATGATCAAATCTAATGATTCAGCACGAGACAAAATAAGGGAACTTCTCGGAGATGCTTTATCTAAGGTCTTTGAAGAGGCAGATGAAGATATGATGGACGAAGTAAATGCATGTGACCCAATTCGTGTTGCAGTGACAGTGGAGTCTCTATTATTTGAAAAGTGGGGTCCTTCAAATGGAGCCCAAAAGGTCAAGTATAGGTCATTAATGTTTAATCTTAAGGATCAGAATAATCCAGATTTCCGAAGAAAAGTTCTGCTCGGTATTGTTGAGCCGCAGCGGCTAGTCGACATGACTTCAGCAGAAATGGCCAGTGAACAAAGGAAGCAGCAGATTGAGAAACTTGAGAAGAAGGCTTTGTTTGAATGTGAGCGTGGAGGTCAACCAAAAGCTACTACTGATCAATTCAAGTGTGGTAGGTGTGGTCAAAGGAAAACCACCTATTACCAAATGCAGACTCGTAGTGCTGATGAACCTATGACAACGTATGTCACTTGTGTTAACTGCAACAACCGTTGGAAGTTTTGTTAG 1194 0.4196 MILRLYIFPLVISRSFLFFLFTSNTAAAAENNINKYHSESGWVRWRKSWWNYSPHEESRCLDALEQLKKFPVNYQILVNTQVGRHLKSLTKHPRQKIRAFAVDLIEIWKGIIIKETSKNKSGPSDSKAESTNGERAKAGKLQKSPSVKVEKGESVKVEKVNGNGTSELSSGNVKAQNVDVKIEKTDRSSSIKVEKIAKEETHVSVAKKISSSSAAPPKLKTMIKSNDSARDKIRELLGDALSKVFEEADEDMMDEVNACDPIRVAVTVESLLFEKWGPSNGAQKVKYRSLMFNLKDQNNPDFRRKVLLGIVEPQRLVDMTSAEMASEQRKQQIEKLEKKALFECERGGQPKATTDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCVNCNNRWKFC 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03016 397 CDD Zn-ribbon_TFIIS 350 396 - -
Vifa2g03016 397 Pfam Transcription factor S-II (TFIIS), central domain 226 343 IPR003618 GO:0006351
Vifa2g03016 397 SUPERFAMILY Zinc beta-ribbon 337 395 - -
Vifa2g03016 397 Gene3D - 326 397 - -
Vifa2g03016 397 ProSiteProfiles TFIIS N-terminal domain profile. 44 115 IPR017923 -
Vifa2g03016 397 SMART TFS2_5 42 114 IPR003617 GO:0005634
Vifa2g03016 397 ProSiteProfiles TFIIS central domain profile. 229 352 IPR003618 GO:0006351
Vifa2g03016 397 Gene3D - 206 325 IPR036575 GO:0006351
Vifa2g03016 397 Coils Coil 319 339 - -
Vifa2g03016 397 MobiDBLite consensus disorder prediction 118 152 - -
Vifa2g03016 397 Pfam TFIIS helical bundle-like domain 63 112 IPR017923 -
Vifa2g03016 397 NCBIfam transcription elongation factor S-II 55 397 IPR006289 GO:0003676|GO:0005634|GO:0006368
Vifa2g03016 397 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 41 127 IPR035441 -
Vifa2g03016 397 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 49 397 - -
Vifa2g03016 397 SMART mid_6 227 335 IPR003618 GO:0006351
Vifa2g03016 397 Pfam Transcription factor S-II (TFIIS) 357 395 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vifa2g03016 397 SUPERFAMILY Elongation factor TFIIS domain 2 216 327 IPR036575 GO:0006351
Vifa2g03016 397 ProSitePatterns Zinc finger TFIIS-type signature. 359 394 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vifa2g03016 397 PIRSF TFIIS 23 397 IPR035100 -
Vifa2g03016 397 SMART Cys4_2 357 396 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vifa2g03016 397 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 28 127 IPR035441 -
Vifa2g03016 397 ProSiteProfiles Zinc finger TFIIS-type profile. 355 395 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vifa2g03016 397 CDD TFIIS_I 56 112 - -
Vifa2g03016 397 FunFam Probable Transcription elongation factor S-II 326 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03016 Vifa-Chr2 858494768 858498888 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vifa2g03016 TFIIS_M 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03016 K03145 - gmx:100811982 541.962