Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03005 ATGAAGCTGAAATTCTCTAATGCTGCTCTTTTTCTATTAATCGCATCGCTGTCTCTCTTTAGCTTGATTATAGCAGCTTCTGACTTGAACTCGGACCGACAAGCTCTATTGGAGTTTGCTTCTTCTGTTCCACACGCACCAAGGCTCAACTGGAATGACTCGTCTTCAATTTGCACCTCATGGACTGGTGTGACTTGCAACTCAAACCGAACTCGTGTCGTAGGCATCCATCTTCCAGGAATCGGATTAACTGGTTCGATTCCGGAGAACACAATAGGAAAACTAGATGGTCTTAGAGTTCTAAGCCTTCATTCCAATGGTCTTAGAGGGAATCTTCCTTCTAACATCCTTTCCATTCCTTCACTCCAATTCGCACACCTGCAGAAAAACAACTTCTCAGGTCTAATTCCTTCTTCTGTCTCTCCTAAACTAGTTGTATTCGATATTTCCTTTAATGCCTTCTCTGGTAGTATACCTTCTGAGTTTCAGAACCTGAGAAGACTCACGTGGTTTTATCTCCAAAACAATTCTATATCTGGACCTATACCCGACTTCAACCTTCCGAGTCTCAGATACTTGAATTTGAGCAATAATAACTTGAACGGTTCTATTCCAAATTCCATCAAAACATTCCCGTCTACTTCTTTTGTCGGAAACTCTCTCTTATGTGGTCCACCTCTTCTCAGTAACTGCTCTTCAATCTCTCCTTCTCCATCTCCTTCCCCTGCATTCACACAAGACCAAAAAGCTAGAACCGTCCATAAGAAAAGCTTTGGCATAGCAGTTATACTTGCTCTAGTCATTGGAGGAATCGCCTTACTCTCTCTACTAGCGTTAGTGTTCTTTGTTTGCTTCTTGAAGAAGAAAACCAGTAAAAGAAGCGGCATACTGAAAGGAAAGGCTTCTTCTTGTGCTGGAAAGACTGAAATTTCGAAGAGTTTCGGAAGCGGAGTGCAGGCTGCTGAAAAGAATAAGTTATTTTTCTTTGAAGGTTCTTCTTATACCTTTGATCTCGAAGATCTACTAAAGGCTTCGGCTGAAGTTCTCGGTAAAGGGAGCTACGGTACAGCATACAAGGCGGTTTTGGAGGAGGGGGTGACAATGGTGGTTAAAAGGTTGAAGGAAGTTGTGGTAGGAAAGAAGGAGTTCGAACAACAGTTGGATATTGTCGGGAGATTCGGACGCCACCCTAATGTCATGCCACTTAGAGCTTATTACTATTCCAAAGATGAGAAACTTTTGGTTTACAATTATATGCCAGGAGGCAGCTTGTTTTTCTTGTTGCATGGAAACAAAGGTGCAGGAAGAACACCATTTGATTGGGATTCAAGAGTAAAAGTCGCACTCGGAACAGCTAAAGGAATTGCTTTCATTCACTCAGAAGGAGGTTCAAAATTTACACACGGAAACATAAAATCAACAAATGTACTAATAACACAAGAATTCGATAGCTGCATTTCCGATGTTGGACTACCTCCTCTGATGAACGCGCCAGCAACAATGTCTAGAGCGAATGGATATAGAGCACCAGAAGTAACCGATTCCAAGAAGATCACACAGAAGTCCGACGTATACAGCTTCGGCGTGCTGCTACTTGAAATGCTAACAGGAAAGACTCCGCTTAGATATCCCGGTCATGAAGACGTTGTCGATCTTCCAAGATGGGTTAAGTCCGTTGTGAGAGAGGAATGGACAGCTGAAGTATTTGATGAAGAACTTCTTCGAGGACAATATGTTGAAGAGGAAATGGTTCAGATGCTTCAGATTGGACTTGCGTGTGTCGGCAAGACGCCGGATATGAGGCCGAGAATGGATGAAGCTGTTAGAATGATAGAGGAAATTAAACATCCTGAGTTTAAGAACAGAACATCCTCGGAGTCTGAATATTCTAATCTGCAAACACCATAA 1908 0.4245 MKLKFSNAALFLLIASLSLFSLIIAASDLNSDRQALLEFASSVPHAPRLNWNDSSSICTSWTGVTCNSNRTRVVGIHLPGIGLTGSIPENTIGKLDGLRVLSLHSNGLRGNLPSNILSIPSLQFAHLQKNNFSGLIPSSVSPKLVVFDISFNAFSGSIPSEFQNLRRLTWFYLQNNSISGPIPDFNLPSLRYLNLSNNNLNGSIPNSIKTFPSTSFVGNSLLCGPPLLSNCSSISPSPSPSPAFTQDQKARTVHKKSFGIAVILALVIGGIALLSLLALVFFVCFLKKKTSKRSGILKGKASSCAGKTEISKSFGSGVQAAEKNKLFFFEGSSYTFDLEDLLKASAEVLGKGSYGTAYKAVLEEGVTMVVKRLKEVVVGKKEFEQQLDIVGRFGRHPNVMPLRAYYYSKDEKLLVYNYMPGGSLFFLLHGNKGAGRTPFDWDSRVKVALGTAKGIAFIHSEGGSKFTHGNIKSTNVLITQEFDSCISDVGLPPLMNAPATMSRANGYRAPEVTDSKKITQKSDVYSFGVLLLEMLTGKTPLRYPGHEDVVDLPRWVKSVVREEWTAEVFDEELLRGQYVEEEMVQMLQIGLACVGKTPDMRPRMDEAVRMIEEIKHPEFKNRTSSESEYSNLQTP 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03005 635 FunFam Leucine-rich repeat receptor-like protein kinase 31 141 - -
Vifa2g03005 635 Gene3D Transferase(Phosphotransferase) domain 1 419 633 - -
Vifa2g03005 635 ProSiteProfiles Protein kinase domain profile. 343 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03005 635 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Vifa2g03005 635 ProSitePatterns Protein kinases ATP-binding region signature. 349 380 IPR017441 GO:0005524
Vifa2g03005 635 Gene3D Ribonuclease Inhibitor 143 232 IPR032675 -
Vifa2g03005 635 FunFam Leucine-rich repeat receptor-like protein kinase 142 231 - -
Vifa2g03005 635 SUPERFAMILY L domain-like 33 228 - -
Vifa2g03005 635 SUPERFAMILY Protein kinase-like (PK-like) 347 622 IPR011009 -
Vifa2g03005 635 ProSiteProfiles Leucine-rich repeat profile. 189 211 IPR001611 GO:0005515
Vifa2g03005 635 Gene3D Phosphorylase Kinase; domain 1 309 418 - -
Vifa2g03005 635 Pfam Protein kinase domain 347 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03005 635 PANTHER OS05G0588300 PROTEIN 12 625 - -
Vifa2g03005 635 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 419 625 - -
Vifa2g03005 635 FunFam pollen receptor-like kinase 1 311 418 - -
Vifa2g03005 635 Gene3D Ribonuclease Inhibitor 30 142 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03005 Vifa-Chr2 856928103 856930241 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03005 25 615 Receptor kinase-like Gene Family AT5G58300 60.336 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa2g03005 Pkinase 9.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03005 - - aprc:113868460 962.985