Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03003 ATGGTTCCTTGTACGAGCATTCGATTACGGGCTAATTCTGGTTCTGGATATGAGGAAGTTGTGATCAGAAATGGTGGAGAGGGAGATCGGGTTGAGGAATTGAGCTGTAATGAGGTGATTGGTGGCCGTGGTTTGGTGTTGTCGGAGGAGGCTCGCCGTGTTATAGCTGCGGAGAGGGTTCCTCTTGTTTCTTTGGCTGATGTTGTCGGTGGTGGTGGTGGTAGGGATGGCTCTTCTGCTCACTCGAGGATTGATTTTCAGCGGATTGTGAAGCTTGTTGAACGGATTCTTCCTTTCTCACTGTTGTTGTTGGTTGTTTTGATTCGCCAGCATTTGCAAGGTTTCTTTGTCACAATCAGTGTATCAGCTGTAATGTTCAAGTCAAATGAAATTGTTAAGAAACAGACTGCTCTAAAGGGAGATCAGAAAGTCTCTATTCTTCTTGGTGTCGCTTTTTCCTTCACGCTGTATGTGACATGCATTTACTGGTGGTATCGGAATGATGATATTTTACTTCCACTGGCCTTGTTTCCACCAAAAGCAACACCACCTTTCTGGCATGCAATATTCATCATTTTGGTTAATGACATATTGGTGCGGCAAGCGACAATGGCTTTCAAGTGTTTGTTGCTGCTTTACTACAAAAATGGCAGATGCCATAATTTCCGTCGACAGGCTCAAATGTTAACTCTGGTTGAATACACACTGCTGCTGTATCGTGCTTTCTTGCCAACGCCAGTTTGGTACCGATTTTTCTTTAACAAGGACTTTGGAAGTCTCTTCTCGTCATTGATCACAGGATTGTATATAACATTCAAGCTAACATCTGCAGTTGAGAAAGTCCAATGCTTTATTCGTGCTCTAAAAGCGTTGTCAAGAAAGGAAGTTCATTATGGGGTTTATGCCACAACAGAACAGGTCAGTGCTGCTGGTGATCTTTGCGCTATATGCCAAGAGAAGATGCACGGTCCTATCCTGTTGTGCTGTAAACACATGTTCTGCGAGGAGTGTGTATCCGAATGGTTTGAAAGAGAATGGACTTGCCCGTTATGCAGGATATTGGTAAAACATGCTGATCTGCGGACCTTTGGAGATGGATCAACAAGTTTGTTTTTTCAACTGTTTTGA 1128 0.4353 MVPCTSIRLRANSGSGYEEVVIRNGGEGDRVEELSCNEVIGGRGLVLSEEARRVIAAERVPLVSLADVVGGGGGRDGSSAHSRIDFQRIVKLVERILPFSLLLLVVLIRQHLQGFFVTISVSAVMFKSNEIVKKQTALKGDQKVSILLGVAFSFTLYVTCIYWWYRNDDILLPLALFPPKATPPFWHAIFIILVNDILVRQATMAFKCLLLLYYKNGRCHNFRRQAQMLTLVEYTLLLYRAFLPTPVWYRFFFNKDFGSLFSSLITGLYITFKLTSAVEKVQCFIRALKALSRKEVHYGVYATTEQVSAAGDLCAICQEKMHGPILLCCKHMFCEECVSEWFEREWTCPLCRILVKHADLRTFGDGSTSLFFQLF 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03003 375 CDD RING-HC_RNFT1-like 312 352 - -
Vifa2g03003 375 ProSitePatterns Zinc finger RING-type signature. 329 338 IPR017907 -
Vifa2g03003 375 ProSiteProfiles Zinc finger RING-type profile. 314 352 IPR001841 -
Vifa2g03003 375 SUPERFAMILY RING/U-box 304 357 - -
Vifa2g03003 375 SMART ring_2 314 351 IPR001841 -
Vifa2g03003 375 Pfam Zinc finger, C3HC4 type (RING finger) 312 355 - -
Vifa2g03003 375 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 71 375 IPR044235 GO:0061630|GO:1904294
Vifa2g03003 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 362 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03003 Vifa-Chr2 856170164 856174441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03003 12 375 C3H Transcription Factor Family AT5G01960 64.054 2.47e-172 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03003 - K22379 gmx:100784614 530.02