Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03001 ATGGAAGCGCTCGTATGCAGAAAATTGGGCGACCCAACGGCCCCCCTGGAAGCCGATAACAGCTCAATCTTCGTATCCATTCTCGGCAAGTATCAGGAGAAACCACCTTTGCCATTCATTCCTGGATCCGATTTTTCAGGCATCGTTGATTCCGTTGGCCCCAAAGTTACCAATTTCCGTGTTGGAGATCCTGTTTGTTCCGTCGCCGCTCTTGGATCGTACGCTCAGTATATAGTTGTTGATCAGAACGACTTGTTTCGCGTGCCGGAAGGTTGTGATTTGGTTGCTGCTGGAGCACTTGCTGTGGCATTTGGGACTTCTCATGTTGCGCTATCTCATAGAGCTCAGTTGAAGTCTGGTCAGGTATTGTTGGTTTTGGGTGCAGCAGGAGGTGTGGGTCTTGCAGCTGTGCAAATTGGGAAAGCATGTGGAGCCGTTGTCATTGCTGTTGCTAGGGGAGATGAAAAGGTGCAGCTCTTGAAATCACTTGGTGTTGATCATGTGGTGGATTTGGGTCATGAAAATGTCATTGAGAGTGTCAAAGAGTTCCTCAAGGTCAGAAGGCTTAAAGGGGTTGATGTCCTGTATGACCCAGTTGGAGGCAAGCTTACCAAAGAATCTTTGAAGGTTCTGAAATGGGGAGCTCACATTCTAATAATTGGGTTTGCAAGTGGAGAAATTCCTGTCATCCCTGCTAACATAGCTCTTGTTAAGAATTGGACAGTACACGGGCTTTATTGGGGTAGTTATAAAATACACCGCCCAGCTGTTCTTGAAGATTCTATCAAGGAGCTACTGTCTTGGTTGGCAAAAGGCTTGATTTCCATTCACATTTCTCATTCTTACAGCTTGTCAGAGGCCAACCTTGCCTTCTCAGCCATCAAAGAAAGGAAAGTTATCGGGAAAGTGATGCTTGTATTTGATGAGAAAACTACAAGATCTAAGCTATGA 951 0.4595 MEALVCRKLGDPTAPLEADNSSIFVSILGKYQEKPPLPFIPGSDFSGIVDSVGPKVTNFRVGDPVCSVAALGSYAQYIVVDQNDLFRVPEGCDLVAAGALAVAFGTSHVALSHRAQLKSGQVLLVLGAAGGVGLAAVQIGKACGAVVIAVARGDEKVQLLKSLGVDHVVDLGHENVIESVKEFLKVRRLKGVDVLYDPVGGKLTKESLKVLKWGAHILIIGFASGEIPVIPANIALVKNWTVHGLYWGSYKIHRPAVLEDSIKELLSWLAKGLISIHISHSYSLSEANLAFSAIKERKVIGKVMLVFDEKTTRSKL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03001 316 SMART PKS_ER_names_mod 1 305 IPR020843 GO:0016491
Vifa2g03001 316 SUPERFAMILY GroES-like 28 121 IPR011032 -
Vifa2g03001 316 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 92 258 IPR036291 -
Vifa2g03001 316 Gene3D - 103 250 - -
Vifa2g03001 316 Pfam Zinc-binding dehydrogenase 131 270 IPR013149 -
Vifa2g03001 316 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 20 305 - -
Vifa2g03001 316 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 120 141 IPR002364 GO:0008270|GO:0016491
Vifa2g03001 316 CDD QOR1 1 305 - -
Vifa2g03001 316 Gene3D - 27 301 - -
Vifa2g03001 316 Pfam Alcohol dehydrogenase GroES-like domain 31 67 IPR013154 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03001 38 236 Monolignol Biosynthesis Gene Families AT1G72680 27.083 9.58e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03001 K00344 - gmx:100817700 498.819