Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02990 ATGGAGTCTCTGAAAGCTGCGATTCCAGAGAAACTAAAACAACTGATTAGGGACAGCACTGTTCACACTCTTCGCGACACATGTTCTTCTCTTCATCACTTCTTTCTCCATTTCGAACCATTTCACCAGATGGTGGCTGAACTTGCAGACCCTAGCTATGCTCTATGCGGCAAGAACAAAGAAACCGCGTTGAAATATAAGCAGCTTGGTAATCAATGCTTCTCAAACGCTGATTATGCCAAGGCACTGGATTATTATACTCAGGCATTGCGCAGGGCTCCTTTTGAATTTGGTGCAATTGAAAATAATTTGATTGCAACATTGTATATTAATCGAGCTACTGTATTGCATAAAATGAATCTTTTAGTAGAATGTTTGCGAGATTGTAATCGAGCTCTTCAGATATGTCCAAGCTATTCAAAGGCATGGTATAGGAGAGGAAAGGCAAATGTCTCATTGGGAAATAATAGAGATGCGATCTGTGACCTAAATATAGCTAAGACTGTCGAATCGTCCACAGGTGGTAAGAAACAAATAGAACGTGAGGTGAAGATTATTTTAGACCAATCCAAGAGTGCAAATATAGCAGTACAGCAGCGACACAAGGAAAATAGCTTGAATACAGTGGGTGAGATGCCTCAAATAAAGCTGCAAAGTGTCTCCATGCCTGATAAAGGAAGAGGCACAGTGCCATCATATGATGTTTCACCAGGTTCGTTGGTTCATGCTGAAGAACCTTATGCCACAATAATATTAAAGCAATGCCGGGAAACCCATTGCCATTATTGCTTGAATGACCTACCTGCTGATAGAGTTCCTTGTATATCGTGCTCAATACCACTGTATTGCTCCCACCAATGCCAGATAAAGGCAGGCGGGCAAGCGTTCAGGATTTCCACAGAAGATAATCACATTCTTAAAAACTTACCCCGTGATCTTGGAGAATATGCTGCTGAAGTGATTCAGTATAATGATTGTGAACAAAAGATTGATGATGTTACTGAACATCAACACGAATGTCAGGGGGTACATTGGCCTGCTGTATTGCCTTCTGAGATAGTTTTGGCTGGCAGAGTTCTAGCGAAGTTTTTGTCAAAGAGCTCTTCTGGAGATATCACAAGTTTTGTGGAAAAGTTGGAGCTTTCCCACTGCTATGAACGTATGCCATTTGAAAGTAAATTGGATTCACATATATACGCAATTGTATTGTTATATTGTCTTAAACACTCTCATGGAACTATGTTTTCCATTGATGGAATCTCTATATCACAGGTTGTCATAGTTATTTCTCAGATTAAAGTGAATTGTATGACTGTTGTTCGTTTAAAATCAATAGACGCTCATGGACTATCAGATCAGTCTGGAGGATTTCCATTTCATTCCAATGTACATTTAACTAGTAACGTGGAACAGATCAGAGTGGGCAAAGCTATTTATAAAGCTGGCAGTTTATTCAACCATTCTTGCCAACCAAATGTTCATGCATATTTTCTTTCACGCACACTCTATTTACGAACAACAAAAGCTGTAGCAGCTGGGTGTCAGCTGGAATTGTCTTATGGTCCACAGGTTGGTTTGTGGGATTGTAAAGATCGCCAAAGTTTTCTCCAAGATGAATACGCATTTCATTGTCAATGTACTGGTTGTTCAGAAGTCAATCTATCTGACATTGTCCTCAATGCTTTTCGTTGTATCTACCCAAATTGTTCTGGCGCAGTGTTGGAAAGCAGAGTACTTGAGTGTGAAAAGCAGAAAACCGTTCACTTCCCTATTGCTGACAAAGTTATCAAGTATGATGACATCTATGAAGTTTGTCTGCATGCATTTAACCAAAATGATGCCTCTACTCATATTCAACCTGGACACTGTTTAAAATGTGGTTCTTACTGTGATCTGGAGTCTTCACGTGCCATAGTTGATAAAGCCTTAATATGCATAAAAAGGCTGCAGGATGCAATATTGTCAAAAGAAATTTCAAATACTTCCATCTCAGACGCTTTGAGATCTCTTCATTTGCTAAGATCAAATTTGCATGCATACAATAAGGTTATTGCAGAGGCTGAAGACAACCTTGCCCAAGCTTTTTGTTTAGTCGGAGAATTACAATTATCTGCGGATCATTGTAAAGCATCTATTCAGATTCTGGAAAAGCTATATGATCCCGATGATATTGTTATTGCTTATGAACTTGTGAAGCTTTCATCCGTCCAACTTTCCTTGGGTGACGATAGTGCTGTCAACAGCATTAGTCGAATAGGTGCTATCTTCTCACGTTATTATGGACTTCATGCAGACTTGGTCTTTCCTTACCTTCAATACCTCAGGAGAGAAATTTAG 2337 0.3954 MESLKAAIPEKLKQLIRDSTVHTLRDTCSSLHHFFLHFEPFHQMVAELADPSYALCGKNKETALKYKQLGNQCFSNADYAKALDYYTQALRRAPFEFGAIENNLIATLYINRATVLHKMNLLVECLRDCNRALQICPSYSKAWYRRGKANVSLGNNRDAICDLNIAKTVESSTGGKKQIEREVKIILDQSKSANIAVQQRHKENSLNTVGEMPQIKLQSVSMPDKGRGTVPSYDVSPGSLVHAEEPYATIILKQCRETHCHYCLNDLPADRVPCISCSIPLYCSHQCQIKAGGQAFRISTEDNHILKNLPRDLGEYAAEVIQYNDCEQKIDDVTEHQHECQGVHWPAVLPSEIVLAGRVLAKFLSKSSSGDITSFVEKLELSHCYERMPFESKLDSHIYAIVLLYCLKHSHGTMFSIDGISISQVVIVISQIKVNCMTVVRLKSIDAHGLSDQSGGFPFHSNVHLTSNVEQIRVGKAIYKAGSLFNHSCQPNVHAYFLSRTLYLRTTKAVAAGCQLELSYGPQVGLWDCKDRQSFLQDEYAFHCQCTGCSEVNLSDIVLNAFRCIYPNCSGAVLESRVLECEKQKTVHFPIADKVIKYDDIYEVCLHAFNQNDASTHIQPGHCLKCGSYCDLESSRAIVDKALICIKRLQDAILSKEISNTSISDALRSLHLLRSNLHAYNKVIAEAEDNLAQAFCLVGELQLSADHCKASIQILEKLYDPDDIVIAYELVKLSSVQLSLGDDSAVNSISRIGAIFSRYYGLHADLVFPYLQYLRREI 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02990 778 Gene3D SET domain 414 520 IPR046341 -
Vifa2g02990 778 Gene3D Tetratricopeptide repeat domain 38 205 IPR011990 GO:0005515
Vifa2g02990 778 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 777 - -
Vifa2g02990 778 Coils Coil 670 690 - -
Vifa2g02990 778 Gene3D Tetratricopeptide repeat domain 526 775 IPR011990 GO:0005515
Vifa2g02990 778 Pfam SET domain 465 521 IPR001214 GO:0005515
Vifa2g02990 778 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Vifa2g02990 778 SUPERFAMILY TPR-like 58 166 IPR011990 GO:0005515
Vifa2g02990 778 SMART tpr_5 685 718 IPR019734 GO:0005515
Vifa2g02990 778 SMART tpr_5 63 96 IPR019734 GO:0005515
Vifa2g02990 778 SMART tpr_5 140 173 IPR019734 GO:0005515
Vifa2g02990 778 SMART tpr_5 106 139 IPR019734 GO:0005515
Vifa2g02990 778 ProSiteProfiles SET domain profile. 294 521 IPR001214 GO:0005515
Vifa2g02990 778 SUPERFAMILY SET domain 221 546 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa2g02990 SET 9.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02990 K24634 - gmx:100783548 1206.82