Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02989 ATGGCACCACCGGGTCGACCCAAAAAAGTCGTGCAAATGGAAGAAGAAGATGGTCATGATGAGATGAAGAAGAACGCGGTGAGAGCTTTGCCATTCTTTAAACTGTTGAGCTATGCTGACTATGTGGATTGGATTCTTATGGGCTTGGGAACTTTAGGTTCTATTGTGCATGGCATGGCACTTCCTGTTGGTTATTTGTTGTTAGGAAAAGCTCTTAATGCTTTTGGTAACAATATTCATGACATTGATGCTATGGTTCCTGCTCTTAAAAAGGTTGTTCCGTACGTGTGGTACATGGCCATCGCGACATTTCCAGCTGGAGTACTTGAGATTGGTTGTTGGATGTATGCAAGTGAAAGACAGTTATCGCGCCTAAGATTAGCATATCTAAAAGCAGTCCTAAGCCAAGAGATAGGAGCTTTTGATACAGAATTAACAAGTGGAAAAGTCATCACTGGAATAAGCAAGCACATGAGTGTCATACAAGATGCCATTGGTGAAAAGTTGGGTCACTTTACCTCCAGCTGCGCAACTTTCTTAGCTGGAATTGTGATTGCCGCTATAGCCTGTTGGGAAGTAGCACTCCTATGTTTAGTGGTTGTCCCTCTTATTCTCATAATTGGAGCAAGTTACACCAAGAAAATGAACAAAGTCTCAACTACCAAATTGTTTTACCATTCTGAAGCCACGTCTATGATAGAACAGACCATATCACAAATAAAAACAGTATATGCTTTTGTTGGAGAGGGTTTGGCAGTCAAATCCTTCACAGAGAACATGGATAAACAGTATGCCATTAGCAAGGGGGAGGCACTTGTGAAGGGAGTTGGAACAGGAATGTTTCAAACTGTGAGTTTTTGTTCTTGGTCTCTGATTATATGGGTTGGAGCCGTTGTTGTCAGAGCCGGTAGAGCAAAGGGAGGAGATATAATAACTGCAGTAATGAGTATCCTTTTTGGTGCCATATCTATCACTTATGCAGCACCAGACATGCAAATATTCAATCAGGCAAAAGCTGCAGGATATGAGGTCTTTCAAGTGATCCAAAGAAAGCCACTAATACATAATGAATCAAAAGGGAAGATTCCTACGAAGATTAGCGGTTACATTGAGCTTCGAGATGTTCACTTTTCATATCCATCACGGCCAGAGAAATCTATCCTTCAAGGACTGTCATTGTCCATACCAGCAGGAAAGACAGTAGCTCTAGTTGGTAGTAGCGGCTGTGGAAAGAGCACTGTCATTTCCCTGATAACTCGGTTTTATGACCCCGCTAGAGGAGAAATTTTTATTGACAGTCACAATATCAAGGACCTTGATCTGCAGTTTCTTCGAAGTAATATAGGGGCTGTATACCAAGAGCCATCACTCTTTACGGGCACGATCAAGGATAATTTGAAACTGGGAAAAATGGATGCAGATGATGAAGAGATTCAGAAGGCAGCAGTGATGTCTAATGCACACTCTTTCATATCACAGCTTCCTAATCAGTACCTAACCGAGGTAGGACAAAGGGGTGTTCAAGTATCAGGAGGTCAGAAGCAGAGAATCGCAATTGCAAGAGCCATTCTGAAAAATCCTCCCATTCTTTTGCTTGACGAGGCCACTAGTGCCCTCGATTCAGAGTCGGAAAAGCTGGTTCAAGAAGCACTTGACACAGCTATGGAGGGAAGGACTGTCATCTTGATTGCACACAGGCTTTCAACAGTTGTAAATGCAGATATGATTGCTGTAGTGGAGAATGGACAAATCGTAGAGACAGGAACACACCAGAGTTTGTTAGAAACGAGCAAATTTTATAGTACATTATTCAGCATGCAGAACCTTGAATCAGCTCCTGAATTAAGAACAACAACTTCCAAGAATAAAAGTGCTCGCCAAGTAGGCACTATCGATGAAACTAGACCATTACCGGAGACCCAGAGAGAGGTCCAAAGAGATCTCACCGAGCATTCTGTACTGGAGGAACAGAACAAGACGAGCACAAGAGAAGAAAGTGTATTTTTCAGAATTTGGTTTGATTTAAAAAAGAAGGAGCTAGTGAAGATTGCTATTGGCTCGTTTGCAGCAGCTTTCTCTGGCATCTCAAAGCCGTTTTTCGGTTTCTACATCATAACCATCGGAGTAGCATACTTTGAAGAAGATGCAAAACGAAAAGTTGGAATGTTCTCAGCAATCTTCTCTGGAATAGGATTGCTTTCATTATTTAGCCACACCTTCCAGCATTACTTCTTTGGAGTGGTTGGAGAAAAGGCCATGGTGAATTTCAGACGTGCTTTGTATTCAGGTGTGCTTCGTAACGAAATAGGCTGGTTTGACAAACCTGACAACACAGTCGGTTCGTTAACTTCACGAGTCATCAGCGATACTTCTATGGTCAAAATCATAATCGCTGATCGCATGTCCGTGATTGTGCAATGTGTTTCCTCCATACTAATAGCAACAGGTGTTAGCATGTATGTCAACTGGAGAATGGGTTTGGTGGCATGGGCTGTGATGCCCTGCCACTTCATAGGTGGTCTCATTCAAGCCAAGTCTGCCAAAGGATTTTCAGGCGACTACTCTGCGTCACATTCAGACCTTGTCGCTCTTGCATCTGAGTCCACAACCAACATAAAGACTATAGCATCCTTTTGCCATGAAGAACAAGTACTGAAGAAAGCAAAAACCTATCTGGACATTCCAAAGAAAAAGTACAGGAAAGAAAGTATCAAATATGGGATCATCCAAGGCTTCTCCCTTTGCTTGTGGAACATCGCACACGCCGTTGCTTTGTGGTACACTACAATTTTGGTCGACAGACGGCAAGCCTCTTTTGAAAATGGAATAAGAGCATACCAAATATTTTCTCTCACAGTTCCTTCTATCACAGAATTATACACACTGATCCCAACTGTCATCACTGCCATCAATATGCTAACCCCAGCATTCAAAACCCTTGACCGCAAAACTGAAATTGAACCAGATATACCAGACGACTCACAACCCGAGAGGATTGAAGGAACCGTCGAATTTGAAAATGTAAATTTTAAGTACCCTTTAAGACCTGGAGTCACTGTTCTTGACAATTTCAGTTTACAAATCGAAGCTGGATCTAAGGTGGCTTTTGTAGGACCGAGCGGTGCTGGAAAGTCGTCTGTTTTGGCCCTTTTACTAAGATTTTACGATCCAGTGGAGGGAAAAGTACTAATTGATGGGAAAGACTTGAGGGAATATAATCTAAGATGGTTAAGGACACAAATAGGGCTTGTACAACAAGAGCCACTGCTTTTTAACTGCTCAATTCGAGACAATATTTGCTATGGCAATAACGGAGCTTCTGAAAGTGAAATTGTGGAGGTTTCTCGAGAAGCAAATATACATGAATTTGTGAGTAATTTACCAAATGGATATAACACTGTTGTTGGAGAGAAAGGTTGCCAGCTTTCAGGAGGACAAAAGCAAAGAATAGCCATTGCTAGAACCTTACTGAAGAAGCCAGCAATATTACTCCTTGATGAAGCAACCAGTGCGCTCGATGCTGAGTCTGAAAGAACCATAGTAAATGCTATTAAAGCAATGAATCTGAAGGAAGCAACTGGTTTGTGTTCAAGAACCACCCAGATCACAATAGCTCATAGACTTTCCACAGTCAAAAACTCCGATACCATAATCGTCATGGAAAAAGGTAGAATTGTAGAGACGGGCTCACACTCAACTCTAATAGCAGTGGATGCAGGACTTTATTCAAGATTATTCAGACTACAGAGCTTCGACGAAACCTCATAG 3768 0.4201 MAPPGRPKKVVQMEEEDGHDEMKKNAVRALPFFKLLSYADYVDWILMGLGTLGSIVHGMALPVGYLLLGKALNAFGNNIHDIDAMVPALKKVVPYVWYMAIATFPAGVLEIGCWMYASERQLSRLRLAYLKAVLSQEIGAFDTELTSGKVITGISKHMSVIQDAIGEKLGHFTSSCATFLAGIVIAAIACWEVALLCLVVVPLILIIGASYTKKMNKVSTTKLFYHSEATSMIEQTISQIKTVYAFVGEGLAVKSFTENMDKQYAISKGEALVKGVGTGMFQTVSFCSWSLIIWVGAVVVRAGRAKGGDIITAVMSILFGAISITYAAPDMQIFNQAKAAGYEVFQVIQRKPLIHNESKGKIPTKISGYIELRDVHFSYPSRPEKSILQGLSLSIPAGKTVALVGSSGCGKSTVISLITRFYDPARGEIFIDSHNIKDLDLQFLRSNIGAVYQEPSLFTGTIKDNLKLGKMDADDEEIQKAAVMSNAHSFISQLPNQYLTEVGQRGVQVSGGQKQRIAIARAILKNPPILLLDEATSALDSESEKLVQEALDTAMEGRTVILIAHRLSTVVNADMIAVVENGQIVETGTHQSLLETSKFYSTLFSMQNLESAPELRTTTSKNKSARQVGTIDETRPLPETQREVQRDLTEHSVLEEQNKTSTREESVFFRIWFDLKKKELVKIAIGSFAAAFSGISKPFFGFYIITIGVAYFEEDAKRKVGMFSAIFSGIGLLSLFSHTFQHYFFGVVGEKAMVNFRRALYSGVLRNEIGWFDKPDNTVGSLTSRVISDTSMVKIIIADRMSVIVQCVSSILIATGVSMYVNWRMGLVAWAVMPCHFIGGLIQAKSAKGFSGDYSASHSDLVALASESTTNIKTIASFCHEEQVLKKAKTYLDIPKKKYRKESIKYGIIQGFSLCLWNIAHAVALWYTTILVDRRQASFENGIRAYQIFSLTVPSITELYTLIPTVITAINMLTPAFKTLDRKTEIEPDIPDDSQPERIEGTVEFENVNFKYPLRPGVTVLDNFSLQIEAGSKVAFVGPSGAGKSSVLALLLRFYDPVEGKVLIDGKDLREYNLRWLRTQIGLVQQEPLLFNCSIRDNICYGNNGASESEIVEVSREANIHEFVSNLPNGYNTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERTIVNAIKAMNLKEATGLCSRTTQITIAHRLSTVKNSDTIIVMEKGRIVETGSHSTLIAVDAGLYSRLFRLQSFDETS 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02989 1255 MobiDBLite consensus disorder prediction 636 657 - -
Vifa2g02989 1255 Gene3D - 993 1254 IPR027417 -
Vifa2g02989 1255 SUPERFAMILY ABC transporter transmembrane region 676 989 IPR036640 GO:0005524|GO:0016020
Vifa2g02989 1255 MobiDBLite consensus disorder prediction 613 657 - -
Vifa2g02989 1255 ProSitePatterns ABC transporters family signature. 1142 1156 IPR017871 GO:0005524|GO:0016887
Vifa2g02989 1255 CDD ABC_MTABC3_MDL1_MDL2 370 607 - -
Vifa2g02989 1255 CDD ABC_MTABC3_MDL1_MDL2 1003 1249 - -
Vifa2g02989 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 996 1249 IPR027417 -
Vifa2g02989 1255 Gene3D - 360 608 IPR027417 -
Vifa2g02989 1255 FunFam ABC transporter B family member 4 360 614 - -
Vifa2g02989 1255 MobiDBLite consensus disorder prediction 613 629 - -
Vifa2g02989 1255 Pfam ABC transporter 1021 1170 IPR003439 GO:0005524
Vifa2g02989 1255 Gene3D ABC transporter type 1, transmembrane domain 34 966 IPR036640 GO:0005524|GO:0016020
Vifa2g02989 1255 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 49 336 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g02989 1255 CDD ABC_6TM_Pgp_ABCB1_D2_like 677 986 - -
Vifa2g02989 1255 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 344 - -
Vifa2g02989 1255 SUPERFAMILY ABC transporter transmembrane region 34 352 IPR036640 GO:0005524|GO:0016020
Vifa2g02989 1255 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 684 968 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g02989 1255 Pfam ABC transporter 388 537 IPR003439 GO:0005524
Vifa2g02989 1255 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 606 IPR003439 GO:0005524
Vifa2g02989 1255 SMART AAA_5 397 589 IPR003593 GO:0016887
Vifa2g02989 1255 SMART AAA_5 1030 1224 IPR003593 GO:0016887
Vifa2g02989 1255 FunFam ABC transporter B family member 1 993 1250 - -
Vifa2g02989 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 607 IPR027417 -
Vifa2g02989 1255 PANTHER ABC TRANSPORTER B FAMILY 14 736 IPR039421 -
Vifa2g02989 1255 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1003 1247 IPR003439 GO:0005524
Vifa2g02989 1255 Pfam ABC transporter transmembrane region 685 942 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g02989 1255 Pfam ABC transporter transmembrane region 48 321 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g02989 1255 ProSitePatterns ABC transporters family signature. 509 523 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02989 Vifa-Chr2 853542406 853547250 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02989 2 1254 Calmodulin-binding Proteins AT2G36910 40.498 0.0 959
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02989 K05658 - zju:107414909 1796.94