Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02971 ATGGGCTCTCTTGAGTGTTGTCCGTCGCTGGATGATGGTACGGCGGTGTTGTCGCTGAATTCGCTACCGTTAGGGTTCCGATTCCGACCTACCGACGAGGAGCTTATCGATTACTATCTACGTTCGAAGATCAATGGAAATGGTGAAGAGGTTTGGGTTATCCGAGAAATTGATGTCTGCAAATGGGAACCCTGGGATATGCCTGATTTGTCAGTGATACGAAACAAGGATCCGGAGTGGTTCTTCTTCTGTCCTCAGGATCGGAAGTATCCGAATGGACATAGATTGAACAGAGCAACAACTCATGGATATTGGAAGGCAACAGGCAAGGATCGGAAAATCAAGTCTGGAACCCTCTTGATTGGGATGAAGAAGACTTTAGTTTTCTACAGCGGCCGTGCACCTAAAGGTAAGAGGACTAATTGGGTTATGCATGAGTATCGTCCCACCCTGCAGGAGCTTGATGGTACCAACCCAGGACAGAGTCCATATGTTCTATGTCGATTATTTAAGAAAAACGATGAGAGCGTTGAAGCATCGAACTGTGGAGAAGTGGAGCAGACTAATTCAGCCCCTATGGCTGCCAATTACTCTCCAGAAGAAATACAATCTACTCCAGCTCCTATTACAGCTTCCACCTCACAGGTCACAGAGGAGGAAAAGCAGCTGGCTGTTATCCCCGATATCTCTGAGGAAACAATATCCAAGGCTATAACCTTAGTTGATTGCCCTAGTGATGGATATTATGCCCATGATGTCCAAAAACAAATTGAAAAACTAGCTGCAGAGGAGGATCATGCGTTGAACTTTGACATATATTATAACTCGAAAGATTGTCTATTATTAGATGACAGGATATTCTCGCCAGTTTATATGCCACCTGAATTTGATTATCAAGCAAACAGTGAATCAGACGGTCAATGTGGGTTTCAATATGGTACCAATGAGTTAAATATTTCAGACTTTTTAGATTCAAATCTTAATTGGGATCAAGTTCCCTGTGAGGAGTCTAGTAGTTACCAGCAGAATTTCCCTCGCTTGTTAAGCGTTAAGGACAATGGTTCAGGAAGTGACTCAGACGCAGAAGTTGCCAATATGATGACTTGTACGCAAGCTGCTTATCCTCCCGAGGCTACTTTTCCTTCCAATGTTAATTCTGGTGAAGTATACAACATCAATGCATATGATCAACCTAGAAACTATAATAATACATTTACAAGTGGTGAAAGTGGAATCATCCGAAGGGCCCGGCCGGCACGAGACGAACAATTTAAGCCAAATTTCAATCAAGGTAATGCTGAAAGGAGAATTCGTTTGTCAGATCCTAGACATGGCTCAAAAGGGAGTAGTACAAAAGAACAGCGTAGTTCAAAACCAATCATTGAAGTGGAGAAGAAAGCTGCAGAAAATCATGCTGCCGATGATGAAAGTTCTACCGGAACTAATCACACATATAAAAAGAGGAAGGCATCCAAGTCAGTTATCACCAGAAATATTTCTTTATTGCTAGGAAGGGCGCGGGCGCCTTTCAGATCAAAGACTTCCTCCAACTGTGCCTTGTGGTCTTCCGTTTTTGTAGTTTCTGCCTCTGTACTGGTTTCATTAGTAGCTTTTACTAACATACGGGGATGTATTAAATTTTGA 1644 0.4276 MGSLECCPSLDDGTAVLSLNSLPLGFRFRPTDEELIDYYLRSKINGNGEEVWVIREIDVCKWEPWDMPDLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATTHGYWKATGKDRKIKSGTLLIGMKKTLVFYSGRAPKGKRTNWVMHEYRPTLQELDGTNPGQSPYVLCRLFKKNDESVEASNCGEVEQTNSAPMAANYSPEEIQSTPAPITASTSQVTEEEKQLAVIPDISEETISKAITLVDCPSDGYYAHDVQKQIEKLAAEEDHALNFDIYYNSKDCLLLDDRIFSPVYMPPEFDYQANSESDGQCGFQYGTNELNISDFLDSNLNWDQVPCEESSSYQQNFPRLLSVKDNGSGSDSDAEVANMMTCTQAAYPPEATFPSNVNSGEVYNINAYDQPRNYNNTFTSGESGIIRRARPARDEQFKPNFNQGNAERRIRLSDPRHGSKGSSTKEQRSSKPIIEVEKKAAENHAADDESSTGTNHTYKKRKASKSVITRNISLLLGRARAPFRSKTSSNCALWSSVFVVSASVLVSLVAFTNIRGCIKF 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02971 547 SUPERFAMILY NAC domain 15 172 IPR036093 GO:0003677|GO:0006355
Vifa2g02971 547 Gene3D NAC domain 31 177 IPR036093 GO:0003677|GO:0006355
Vifa2g02971 547 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Vifa2g02971 547 Pfam No apical meristem (NAM) protein 23 148 IPR003441 GO:0003677|GO:0006355
Vifa2g02971 547 MobiDBLite consensus disorder prediction 436 473 - -
Vifa2g02971 547 FunFam Nac domain-containing protein 86 31 175 - -
Vifa2g02971 547 MobiDBLite consensus disorder prediction 415 490 - -
Vifa2g02971 547 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02971 Vifa-Chr2 848294027 848296495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02971 15 439 NAC Transcription Factor Family AT4G35580 43.080 1.38e-98 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa2g02971 NAM 3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02971 - - gmx:100777071 610.912