Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02961 ATGGGTTCAACAACAACAACAAGCGAAACACAAATAACACCAACCCATGTCTCAGACGAAGAAGCAAACCTCTTCGCCATGCAACTAGCAAGCGCTTCTGTTCTTCCAATGATCCTAAAAACCGCTCTCGAACTTGATCTCTTAGAAATCATTGCTAAATCTGGTCCTGGATCTCATCTTTCACCGCTTGATATTGCTTCTCACCTTCCCACAAACAACCCTGATGCACCTGTTATGTTGGACCGTATCTTGCGTTTGTTGGCTTGTTACAATATTCTTACCTGTAGTTTAAGGACTCTAGAAGATGGAAAGGTTCAGAGACTCTACGGTTTGGCTACTGTTGCTAAGTACTTGGTTAAGAATGAAGATGGTGTTTCTATTTCTGCTCTTAATCTCATGAATCAGGATAAAGTACTCATGGAAAGCTGGTACCACCTTAAAGATGCGGTTCTTGATGGGGGCATTCCATTCAACAAAGCATATGGAATGACAGCCTTTGAATACCATGGAACTGATCCAAGGTTTAACAAAGTTTTCAACAAGGGAATGTCTGATCACTCTACCATCACAATGAAGAAAATTCTTGAAACCTACACAGGTTTTCAAGGCCTTAAATCTCTTGTGGATGTAGGTGGTGGTACCGGAGCTGTAATCAACACCATTGTCTCAAAGTATCCCACTATTAAAGGAATTAACTTTGATTTGCCTCATGTCATCGAAGACGCTCCTTCTTATCCAGGAGTCGAGCATGTTGGTGGAGACATGTTCGTCAGTGTTCCAAAGGCTGACGCTATTTTTATGAAGTGGATTTGTCATGATTGGAGTGATGAACATTGTTTGAAATTTTTAAAGAACTGCTATGAAGCACTTCCGGAAAATGGAAAAGTGATTGTGGCAGAGTGCATTCTTCCAGTGGCACCAGACACAAGCTTGGCAACAAAAGGTGTGGTTCACATTGATGTGATCATGTTGGCTCATAATCCAGGAGGGAAAGAAAGGACACAGAAAGAGTTTGAGGATCTTGCCAAAGGTGCTGGATTTCAAGGTTTCAAAGTCCATTGTAGTGCTTTCAACACATACATCATGGAATTTCTTAAGGTTTAA 1104 0.4121 MGSTTTTSETQITPTHVSDEEANLFAMQLASASVLPMILKTALELDLLEIIAKSGPGSHLSPLDIASHLPTNNPDAPVMLDRILRLLACYNILTCSLRTLEDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFQGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKADAIFMKWICHDWSDEHCLKFLKNCYEALPENGKVIVAECILPVAPDTSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCSAFNTYIMEFLKV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02961 367 PIRSF O-mtase 4 366 IPR016461 GO:0008168
Vifa2g02961 367 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 124 364 IPR029063 -
Vifa2g02961 367 SUPERFAMILY "Winged helix" DNA-binding domain 18 122 IPR036390 -
Vifa2g02961 367 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 27 366 IPR016461 GO:0008168
Vifa2g02961 367 Pfam O-methyltransferase domain 143 348 IPR001077 GO:0008171
Vifa2g02961 367 PANTHER O-METHYLTRANSFERASE 26 349 IPR016461 GO:0008168
Vifa2g02961 367 FunFam Caffeic acid 3-O-methyltransferase 4 118 - -
Vifa2g02961 367 FunFam Caffeic acid O-methyltransferase 119 366 - -
Vifa2g02961 367 Gene3D Vaccinia Virus protein VP39 119 366 IPR029063 -
Vifa2g02961 367 Gene3D - 4 118 IPR036388 -
Vifa2g02961 367 Pfam Dimerisation domain 37 88 IPR012967 GO:0046983
Vifa2g02961 367 CDD AdoMet_MTases 207 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02961 Vifa-Chr2 846528843 846531286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02961 6 366 Monolignol Biosynthesis Gene Families AT5G54160 77.562 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02961 K13066 - gmx:100780100 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02961 2 846528843 846531286 Vifa2g02961 2 846528843 846531286 ECH