Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02956 ATGCATTCTAATGCTTCAGCTTTCAAACGGTATACTAACAGACAATTGCAAGCATCACCGGCAGTAGTAGTTAACTTCTCTGATCAACAAAGAGAACAAAAAACAAATAATGATAACCATAACTCAGATAGTTCAATACCAAGTATGCAAAAGTGTAATATATCTCCAGCTACAGCCCAATCAAAAGAATCCGAACTCGCAACTTCACATTCCCATCAAGGGCATTCTCTCCCGATTCCTGTAAAAGGCGTAAGGTTCAATGATCTATGTGTGGCCTATGGTTCATCACTTCCACAAGGGTTTTGTACACAATCAGGTCCACCTTCAATGCCAGGTTCAGTTGTGTTTCTCGAACAAAATTTTCAAGCAGATGCATTTTATCAGCCAAATAAAGAAAATAATTCAGAACAAGTTTATGAACCCCGTTGTCCGAATGGAAACAGCACCCCAAACCAAATTGTGTACACACAGGAACACAGGTCAGAACACGCAGAGGATCAAAGACTTATCTCCCCAACAACTGATCAAAGTGTATCCAGTAGTTTCTGTAATAACGGAAATGCAAGCCATCTTAACAGCATTGGTTATGGAAGTAATTGTGGAAGTAGCAACAATGTTGAAAATGTCACCACTTTCAGGATATCAGCAGTTTCCGATGGTAAGAACGAAGACCTCACAAATGGTGGATATTCACATTCACATCGATCTATCCTAAGAGAAGCAGCTCTAAACAAGTTCCGCTTGAAACGAAAAGAGAGATGTTATGAAAAGAAGGTTCGATATGAGAGCAGGAAGAAACTAGCAGAGCAGCGTCCTCGAGTTAAAGGACAATTTGTTCGGCAAGTGAATCCCGATTCTCTTTCTGGAGAAAAAGATTGCTGA 882 0.4014 MHSNASAFKRYTNRQLQASPAVVVNFSDQQREQKTNNDNHNSDSSIPSMQKCNISPATAQSKESELATSHSHQGHSLPIPVKGVRFNDLCVAYGSSLPQGFCTQSGPPSMPGSVVFLEQNFQADAFYQPNKENNSEQVYEPRCPNGNSTPNQIVYTQEHRSEHAEDQRLISPTTDQSVSSSFCNNGNASHLNSIGYGSNCGSSNNVENVTTFRISAVSDGKNEDLTNGGYSHSHRSILREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVNPDSLSGEKDC 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02956 293 ProSiteProfiles CCT domain profile. 239 281 IPR010402 GO:0005515
Vifa2g02956 293 Pfam CCT motif 239 281 IPR010402 GO:0005515
Vifa2g02956 293 MobiDBLite consensus disorder prediction 27 78 - -
Vifa2g02956 293 MobiDBLite consensus disorder prediction 265 293 - -
Vifa2g02956 293 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 37 281 IPR045281 GO:0009909
Vifa2g02956 293 MobiDBLite consensus disorder prediction 39 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02956 Vifa-Chr2 842430067 842431211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02956 214 282 Response Regulator Gene Family AT5G24470 68.493 6.10e-23 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa2g02956 CCT 3.6e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02956 K12130 - gmx:100784383 421.009