Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02955 ATGGGTGAAATTGTGACTAGCGGTGAGAGATTGGTGAGAGTAGAAGAAGAGGAAGAGTGTGGTGAAATGAAGGGGCTTTTGAGATGGGAGAGGTTTTTGCCGAAGATGGTTTTGAGAGTGCTTTTGGTTGAAGCTGATGATTGTACTAGACAGATTATAACAGCACTTCTTAGGAAATGCAATTATAAAGTTGCTGCTGTTGCCGATGGATTGAAGGCATGGGAGATACTTAAGGGAAGACCGCACAATTTCGATCTTATACTTACAGAAGTCGATTTGCCATCGGTATCTGGATATGCGCTTCTCTCGTTAATTATGGAGCATGATACTTGCAAAACCATCCCTGTCATAATGATGTCGTCGCAAGATTCTCTTAGCACAGTATACAAATGCATGTGTAGAGGTGCAGCTGATTATCTTGTTAAGCCGATTCGGATAAATGAACTAAGGAATTTGTGGCAGCATGTTTGGAGAAGACAATCATCAACCGCAACCACTGGCATAAATGGTCCCCAAGATGAAAGTGACGCACAGCAGAAGGTTGAAGCCACTGCTGAAAACAACGCTGCTAGTAATCGTTCTAGTGGTGACGCTGCTTGCATTCAAAGAAATAAGGACTTAATTGAGAAAGGAAGCGATGCACAGAGCTCTTGTACAAAGCCAAACATGGAAGCTGAGAGTGGCCTGGTTGATAACATGCAAGAATTTACTCAACTGAAATGTGCTGAAGCATGTCCAAGTGAAATAAAGACACAAGAATTTGACATTCGTTTAGGCCAGACATTGATCACCCAGGACAGTCACGCTGGAGGATTAAGCGTGGCTAACCGCAAAAATGGAGACACAAACACAAATAATGGCAATGACGTTGATGATCAAGAGCATTTTAGGATTGCTAGCACCAGTGTCTCAAAAAGTCATCCATTGATTGGACAGACAAGCTTGACAATTCTCCACAATTGGATCTTTCTCTTAGAAGCTCTCATCCAAGTAACTTAG 999 0.4234 MGEIVTSGERLVRVEEEEECGEMKGLLRWERFLPKMVLRVLLVEADDCTRQIITALLRKCNYKVAAVADGLKAWEILKGRPHNFDLILTEVDLPSVSGYALLSLIMEHDTCKTIPVIMMSSQDSLSTVYKCMCRGAADYLVKPIRINELRNLWQHVWRRQSSTATTGINGPQDESDAQQKVEATAENNAASNRSSGDAACIQRNKDLIEKGSDAQSSCTKPNMEAESGLVDNMQEFTQLKCAEACPSEIKTQEFDIRLGQTLITQDSHAGGLSVANRKNGDTNTNNGNDVDDQEHFRIASTSVSKSHPLIGQTSLTILHNWIFLLEALIQVT 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02955 332 ProSiteProfiles Response regulatory domain profile. 39 157 IPR001789 GO:0000160
Vifa2g02955 332 Pfam Response regulator receiver domain 40 151 IPR001789 GO:0000160
Vifa2g02955 332 SUPERFAMILY CheY-like 38 162 IPR011006 -
Vifa2g02955 332 SMART REC_2 38 153 IPR001789 GO:0000160
Vifa2g02955 332 MobiDBLite consensus disorder prediction 163 198 - -
Vifa2g02955 332 MobiDBLite consensus disorder prediction 267 292 - -
Vifa2g02955 332 MobiDBLite consensus disorder prediction 267 287 - -
Vifa2g02955 332 Gene3D - 36 271 - -
Vifa2g02955 332 PANTHER TWO-COMPONENT RESPONSE REGULATOR 38 225 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02955 Vifa-Chr2 842428141 842430034 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02955 8 244 Response Regulator Gene Family AT5G24470 60.924 2.01e-95 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa2g02955 Response_reg 4.5e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02955 K12130 - gmx:100784383 422.165