Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02954 ATGGGTGAAATTGTGACTAGCGGTGAGAGATTGGTGAGAGTAGAAGAAGAGGAAGAGTGTGGTGAAATGAAGGGGCTTTTGAGATGGGAGAGGTTTTTGCCGAAGATGGTTTTGAGAGTGCTTTTGGTTGAAGCTGATGATTGTACTAGACAGATTATAACAGCACTTCTTAGGAAATGCAATTATAAAGTTGCTGCTGTTGCCGATGGATTGAAGGCATGGGAGATACTTAAGGGAAGACCGCACAATTTCGATCTTATACTTACAGAAGTCGATTTGCCATCGGTATCTGGATATGCGCTTCTCTCGTTAATTATGGAGCATGATACTTGCAAAACCATCCCTGTCATAATGATGTCGTCGCAAGATTCTCTTAGCACAGTATACAAATGCATGTGTAGAGGTGCAGCTGATTATCTTGTTAAGCCGATTCGGATAAATGAACTAAGGAATTTGTGGCAGCATGTTTGGAGAAGACAATCACAGTCAACCGCAACCACTGGCATAAATGGTCCCCAAGATGAAAGTGACGCACAGCAGAAGGTTGAAGCCACTGCTGAAAACAACGCTGCTAGTAATCGTTCTAGTGGTGACGCTGCTTGCATTCAAAGAAATAAGGACTTAATTGAGAAAGGAAGCGATGCACAGAGCTCTTGTACAAAGCCAAACATGGAAGCTGAGAGTGGCCTGGTTGATAACATGCAAGAATTTACTCAACTGAAATGTGCTGAAGCATGTCCAAGTGAAATAAAGACACAAGAATTTGACATTCGTTTAGGCCAGACATTGATCACCCAGGACAGTCACGCTGGAGGATTAAGCGTGGCTAACCGCAAAAATGGAGACACAAACACAAATAATGGCAATGACGTTGATGATCAAGAGCATTTTAGGATTGCTAGCACCAGTGTCTCAAAAAGTCATCCATTGATTGGACAGACAAGCTTGACAATTCTCCACAATTGGATCTTTCTCTTAGAAGCTCTCATCCAAGTAACTTAG 1002 0.4242 MGEIVTSGERLVRVEEEEECGEMKGLLRWERFLPKMVLRVLLVEADDCTRQIITALLRKCNYKVAAVADGLKAWEILKGRPHNFDLILTEVDLPSVSGYALLSLIMEHDTCKTIPVIMMSSQDSLSTVYKCMCRGAADYLVKPIRINELRNLWQHVWRRQSQSTATTGINGPQDESDAQQKVEATAENNAASNRSSGDAACIQRNKDLIEKGSDAQSSCTKPNMEAESGLVDNMQEFTQLKCAEACPSEIKTQEFDIRLGQTLITQDSHAGGLSVANRKNGDTNTNNGNDVDDQEHFRIASTSVSKSHPLIGQTSLTILHNWIFLLEALIQVT 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02954 333 ProSiteProfiles Response regulatory domain profile. 39 157 IPR001789 GO:0000160
Vifa2g02954 333 MobiDBLite consensus disorder prediction 164 199 - -
Vifa2g02954 333 Pfam Response regulator receiver domain 40 151 IPR001789 GO:0000160
Vifa2g02954 333 MobiDBLite consensus disorder prediction 268 293 - -
Vifa2g02954 333 Gene3D - 36 272 - -
Vifa2g02954 333 MobiDBLite consensus disorder prediction 268 288 - -
Vifa2g02954 333 PANTHER TWO-COMPONENT RESPONSE REGULATOR 38 226 IPR045279 GO:0009736
Vifa2g02954 333 SMART REC_2 38 153 IPR001789 GO:0000160
Vifa2g02954 333 SUPERFAMILY CheY-like 38 165 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02954 Vifa-Chr2 842428141 842430034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02954 8 245 Response Regulator Gene Family AT5G24470 60.251 5.59e-94 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa2g02954 Response_reg 4.5e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02954 K12130 - gmx:100784383 420.624