Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02952 ATGGCGCTAGCAGCACTCCCTCTATTCTCTAATCGTCCATGCCATTGCTCTTCTTCTATAACAACCTTTCTTCCTTCAAATTCCCGTCAACCCTCAACCTTTTCCCCTCATCTTCAAACTCAACCTTTCATCTCCCCACTTACCAAATCACAACCACCAAACAGCAGCTCTTTCCTTTTCCAATTCCGTCCCTCCATCCACTGCCGCTGCACTTCCGACAAGTCCAATGTCGGCTTCCAATTCGTGTCACTCGTCTCTTTGTTTCAAAAAATCGATATCAGCTTTGAGGAAACCAAATCGCTCTTGAGCAATGCTTCCGAACTTAGCTCGATACAACTAGATTCATTGCATGGTCGCATTCTTTATTTACAGTCTCTCGGCTTTTTGAAAAATGAATTGCAAGGACAGCTTAAGCAAGCCAAGCTCAAACCGAGAATCAGGTTTCTTACTGAGTTAAGTGGTGGAGACGAGGATAGTGTTGGGAAAGTGCTGAATATGTTTCCTATTATCTTGAATTATAGGGTGGAACATGTTGAGGAACATATAGAGTTTTTTAGGTCTTTTGCAGACCTTGATGATCAACAAATATTTAGGATAGTGTTGGTGTTTCCAGCTATCTTCACTTGTAGTAGAGAGAGGAAACTGCGTCCTAGAATACAATTTCTCAAGGATTGCGGGTTAGACTCTGGCGATATCTTTAAATTCTTGATCAAAGCACCGGCGTTTTTGGCCATTTCATTCCGCGAGAACCTTGCCTATAAGCTTGTGTTTTTGGTCAAGATTGGGTATAAATATAGGACGAAAGAGTTGGCAGTGGCGATCGCGGCTTCTACTAGAATAAGCCGTGAGAATATGCAGAAGACGGTGAGTGTATTATTGAATTACGGGTTGTCGTCAGAAGATATTTTTGCTATGAGTAAGAAGCATCCACCGACACTGCAGTATAATCACGCCTCTCTAGAGAAGAAGATGAAGTATTTGATAGAGGAGATGGATCGTGACATTAAGGAGTTGCTGGATTTTCCTGCATTTCTTGGATACAAGTTAAATGACAGAATTAAGCATAGGTATGAAATAAAGAAGGATTTGTGGGAGGGAGAAATGTCTCTCAATCAGCTTTTAACTGTTTCAACTGAGAACTTCACTGGTAAGCCAAAAGAGGCTTCTGTAAAATCTAAACTGAAATACAGGTGA 1194 0.4137 MALAALPLFSNRPCHCSSSITTFLPSNSRQPSTFSPHLQTQPFISPLTKSQPPNSSSFLFQFRPSIHCRCTSDKSNVGFQFVSLVSLFQKIDISFEETKSLLSNASELSSIQLDSLHGRILYLQSLGFLKNELQGQLKQAKLKPRIRFLTELSGGDEDSVGKVLNMFPIILNYRVEHVEEHIEFFRSFADLDDQQIFRIVLVFPAIFTCSRERKLRPRIQFLKDCGLDSGDIFKFLIKAPAFLAISFRENLAYKLVFLVKIGYKYRTKELAVAIAASTRISRENMQKTVSVLLNYGLSSEDIFAMSKKHPPTLQYNHASLEKKMKYLIEEMDRDIKELLDFPAFLGYKLNDRIKHRYEIKKDLWEGEMSLNQLLTVSTENFTGKPKEASVKSKLKYR 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02952 397 SMART mt_12 197 228 IPR003690 GO:0003690|GO:0006355
Vifa2g02952 397 SMART mt_12 99 129 IPR003690 GO:0003690|GO:0006355
Vifa2g02952 397 SMART mt_12 335 367 IPR003690 GO:0003690|GO:0006355
Vifa2g02952 397 SMART mt_12 233 264 IPR003690 GO:0003690|GO:0006355
Vifa2g02952 397 SMART mt_12 161 192 IPR003690 GO:0003690|GO:0006355
Vifa2g02952 397 SMART mt_12 303 334 IPR003690 GO:0003690|GO:0006355
Vifa2g02952 397 PANTHER CGI-12 PROTEIN-RELATED 141 382 IPR003690 GO:0003690|GO:0006355
Vifa2g02952 397 Gene3D Transcription termination factor 3, mitochondrial 138 392 IPR038538 -
Vifa2g02952 397 Pfam mTERF 76 260 IPR003690 GO:0003690|GO:0006355
Vifa2g02952 397 Pfam mTERF 218 381 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02952 Vifa-Chr2 842129633 842131226 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa2g02952 mTERF 2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02952 - - gmx:100799904 343.199