LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g02947	ATGAGTTCCGGTGAGTTGGGTTGCATCTACGCCACCTTGATTCTCCACGACGATGGAATCCCAATCACCGCGGAGAAGATCAGCACAATCTTGAAGGCTGCCGATGTCACCGTTGAATCCTACTGGCCAAGCCTATTCGCTAAGCTTGCTCAGAGCAAGAACGTTGACGATCTTGTTTTGAACGCTGGCGTAGCGGGTGGAGCCGCCGTTGTTTCATCCGGTGGAGCAGCACCCGCCGCTAGTGGAGCTGCAGCAGCAGAGGCACCTGTTGAGGCCAAGAAGGAAGAGGCCAAGGAAGAAAGTGATGACGACATGGGCTTTAGTTTGTTTGATTAG	336	0.5357	MSSGELGCIYATLILHDDGIPITAEKISTILKAADVTVESYWPSLFAKLAQSKNVDDLVLNAGVAGGAAVVSSGGAAPAASGAAAAEAPVEAKKEEAKEESDDDMGFSLFD	111

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g02947	111	MobiDBLite	consensus disorder prediction	82	111	-	-
	Vifa2g02947	111	MobiDBLite	consensus disorder prediction	89	105	-	-
	Vifa2g02947	111	FunFam	60S acidic ribosomal protein P1	1	63	-	-
	Vifa2g02947	111	CDD	Ribosomal_P1	5	61	-	-
	Vifa2g02947	111	Pfam	60s Acidic ribosomal protein	22	110	-	-
	Vifa2g02947	111	PRINTS	Ribosomal protein P2 signature	25	36	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Vifa2g02947	111	PRINTS	Ribosomal protein P2 signature	83	97	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Vifa2g02947	111	PRINTS	Ribosomal protein P2 signature	98	109	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Vifa2g02947	111	Hamap	50S ribosomal protein L12 [rpl12].	6	111	IPR027534	GO:0003735\|GO:0005840\|GO:0006414
	Vifa2g02947	111	Gene3D	-	1	63	IPR038716	-
	Vifa2g02947	111	PANTHER	60S ACIDIC RIBOSOMAL PROTEIN P1	1	111	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g02947	Vifa-Chr2	840343625	840344671	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g02947	1	111	Cytoplasmic Ribosomal Protein Gene Family	AT5G24510	54.054	7.66e-38	122

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g02947	K02942		-	egr:104437298	124.02