Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02944 ATGAGTAGTCGCTTTTCTCGCACAATCTATGTTGGCAACCTGCCCTCTGATGTAAGGGAATCAGAAATTGATGATCTATTCTACAAGTATGGCCGCATAATGGAAATTGAATTGAAAGTTCCTCCTCGCCCTCCATGTTATTGTTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGATGCGATTCGGGGTAGGGATGGTTACAACTTTGATGGTTGTCGATTAAGGGTGGAGCTTGCCCATGGAGGTAGAGGGCCATCATCAAGTGATCGACGGGGGTATGGTGGTGGTGGTGGCGGCGGAGGAGGAGGAGGTGGCGGCGGTGCTGCTGGTGGGGGCCGATTTGGTGTCTCACGCCATTCTGAATTTCGAGTTATTGTTCGTGGGCTCCCATCTTCTGCATCCTGGCAAGACTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAAGTTTCCCGTGATAGTGAAGGGACTTTTGGCCTTGTTGATTACACTAACTATGAGGACATGAAATATGCTATTCGGAAACTGGATGACACCGAGTTTAAAAATCCTTGGGCAAGATCATATATTCGGGTGAGAAAGTATGAGAGCAGTCGTTCAAGGAGCCGCAGCAGAAGCCCCAGCAGGAGCAGGAGTCCAAAAAGGGCTAGGAGTAGATCTTTGGAGCGATCTGTGTCAAGGTCACGATCTATTTCTAGATCCAGATCAGCATCACCAATCAAGGTTTCAAGGCCAAGATCCCGAACACGTTCACCCTCTCGTTCAGTATCTCCACCTCCACGATCACCACGCCAGGTTCTGTCAGGGAGCGGTTGA 828 0.4879 MSSRFSRTIYVGNLPSDVRESEIDDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGGGAAGGGRFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYEDMKYAIRKLDDTEFKNPWARSYIRVRKYESSRSRSRSRSPSRSRSPKRARSRSLERSVSRSRSISRSRSASPIKVSRPRSRTRSPSRSVSPPPRSPRQVLSGSG 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02944 275 Gene3D - 123 200 IPR012677 -
Vifa2g02944 275 SMART rrm1_1 124 197 IPR000504 GO:0003723
Vifa2g02944 275 SMART rrm1_1 8 78 IPR000504 GO:0003723
Vifa2g02944 275 MobiDBLite consensus disorder prediction 234 275 - -
Vifa2g02944 275 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 262 - -
Vifa2g02944 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 187 IPR000504 GO:0003723
Vifa2g02944 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Vifa2g02944 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Vifa2g02944 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
Vifa2g02944 275 MobiDBLite consensus disorder prediction 81 113 - -
Vifa2g02944 275 Gene3D - 2 119 IPR012677 -
Vifa2g02944 275 SUPERFAMILY RNA-binding domain, RBD 6 190 IPR035979 GO:0003676
Vifa2g02944 275 FunFam serine/arginine-rich splicing factor SR34A-like 123 200 - -
Vifa2g02944 275 MobiDBLite consensus disorder prediction 219 233 - -
Vifa2g02944 275 MobiDBLite consensus disorder prediction 198 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02944 Vifa-Chr2 838961587 838964789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02944 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 31.579 3.31e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02944 K12890 - gmx:100800653 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02944 2 838961587 838964789 Vifa2g02944 2 838961587 838964789 ECH