Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02942 ATGGCGGTGGCTGAGAATGTTGGAACAAAAATCGACGCTTCCGGTGACAATTTGGACAAGAGTGTGGTTTCATCGGACTCAACTGATGTTGAGAAATCCAAACCCAAGAGCGATCAGAATCTGAACACCAACGGTGTTCCCACTGTTGTTGTTCCAAATGGTAATCATGGGTTCAAGAGTCATCAGATGGGTCAGATGCATGGGAATGGTGTTCAGAATCAGATTCTGGTTGTTAACCATGGGGGCGAGAGTTTCAAGCGTGAAATGAGGGATTTGGAGGAGTTGTTGTCAAAGTTGAATCCGATGGCCGAGGAATTTGTTCCTCCGTCACTGGTAACTAATTATCAGGGATATTTAGCTGCTGGACCTAATGCTGGGTTTGGTTACCGTAACAATTTTATGATTCAGAACAACAGTTCTGTCGATGCCAATGGACAGATTAACAGAAGGAGGAAGAATGGATATAATAATGCCAAGCGGAGAGTGAATCATAAGATGGATATGGAGAAGAGAGAAGAGATGATTAGGAGGACTGTTTATGTGTCTGACATTGATCAGCTGGTCACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGTGGTCAGGTTGTTGATTGCCGTGTATGTGGGGATCCCAATTCTATTCTTCGGTTTGCCTTCGTCGAGTTTACAGATGAAGTCGGTGCTAGGACTGCTTTGAACATGTCTGGAACCATGCTCGGATATTATCCATTGAGAGTGCTCCCTTCGAAGACTGCCATTGCACCTGTTAATCCAACATATCTGCCTAGGTCTGAAGATGAAAGAGAGATGTGCACTAGAACAATTTATTGCACAAATATCGACAAGAAGCTTACTACAGCTGATGTCAAACACTTCTTTGAATCTCTTTGTGGAGAGGTTCAACGCCTGAGGCTTCTTGGGGATTACCATCATTCGACTCGAATTGCTTTTGTGGAGTTCACCGTGGCTGAGAGTGCAATTGCAGCACTGAGCTGTAGTGGCGTGGTTTTGGGTGCACTTGCTATAAGGGTGAGTCCATCCAAGACACCAGTTCGCCCTCGCGCAACCCGACCTCCCATGCACTGA 1089 0.4564 MAVAENVGTKIDASGDNLDKSVVSSDSTDVEKSKPKSDQNLNTNGVPTVVVPNGNHGFKSHQMGQMHGNGVQNQILVVNHGGESFKREMRDLEELLSKLNPMAEEFVPPSLVTNYQGYLAAGPNAGFGYRNNFMIQNNSSVDANGQINRRRKNGYNNAKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEVGARTALNMSGTMLGYYPLRVLPSKTAIAPVNPTYLPRSEDEREMCTRTIYCTNIDKKLTTADVKHFFESLCGEVQRLRLLGDYHHSTRIAFVEFTVAESAIAALSCSGVVLGALAIRVSPSKTPVRPRATRPPMH 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02942 362 MobiDBLite consensus disorder prediction 1 47 - -
Vifa2g02942 362 FunFam Polyadenylate-binding protein-interacting protein 10 268 346 - -
Vifa2g02942 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 276 338 IPR000504 GO:0003723
Vifa2g02942 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 242 IPR000504 GO:0003723
Vifa2g02942 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 252 IPR000504 GO:0003723
Vifa2g02942 362 CDD RRM1_CID8_like 175 254 IPR034823 -
Vifa2g02942 362 Gene3D - 135 254 IPR012677 -
Vifa2g02942 362 Gene3D - 259 357 IPR012677 -
Vifa2g02942 362 SMART rrm1_1 178 248 IPR000504 GO:0003723
Vifa2g02942 362 SMART rrm1_1 275 346 IPR000504 GO:0003723
Vifa2g02942 362 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 94 355 - -
Vifa2g02942 362 SUPERFAMILY RNA-binding domain, RBD 148 254 IPR035979 GO:0003676
Vifa2g02942 362 CDD RRM2_CID8_like 270 351 IPR034825 -
Vifa2g02942 362 FunFam Polyadenylate-binding protein-interacting protein 11 141 254 - -
Vifa2g02942 362 Pfam Ataxin-2 C-terminal region 96 110 IPR009818 -
Vifa2g02942 362 SUPERFAMILY RNA-binding domain, RBD 264 357 IPR035979 GO:0003676
Vifa2g02942 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 274 350 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02942 Vifa-Chr2 838032801 838037851 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02942 176 345 Eukaryotic Initiation Factors Gene Family AT1G34140 26.437 8.29e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02942 - - gmx:100788102 550.821