Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02941 ATGGCTGTTGCTGATAATGTTAGTGGCAAAATCGGTTCTTCAAACCAGAATTTGGAGAACAACAACACCAACAACAACATCGTTGTGTCATCTGAGTCAACTGAGGTGGAGAAATCAAAGCCTAGGAGCGATCAGGATGTGACGATCAACAACGGCGTGTTCAACCATCAGCTTCCGAATGGTGGTAATTATAGCTTCAAGGCTCATCAATTGGGTCAGATGCACGCTAACGGGGTTCAGAATCAGCAGTTTGTGATGAACAATGATGGGTATGTGATGAACGGTGAGAACGAGGGTGAGAGTTTCAAGCGCGAAATGAGGGATTTGGAGGAGTTGTTGTCGAAGCTGAATCCCATGGCTGAGGAATTTGTGCCTCCGTCCCTAACAAATAATCATGGCTACTTAGCTGGACCTGCTGCTGGGTTTGGTTACCCTAACAATTATATACTTCTCAATAATTTTGCTAATGCTAACGGCCAAACTAACCGAAGGAGGAAGGCTGGCTATAGTACTAATGGAAAGCGAAGAGTGAATCATAAAGTAGATATGGAGAAACGAGAAGAGATGATTAGGAGGACTGTTTACGTGTCTGACATTGATCAACTCGTAACTGAAGAGCAGCTGGCATCTCTCTTTCTTAATTGCGGCCAGGTTGTTGACTGCCGTGTATGCGGAGATCCCAATTCTATTCTCCGTTTTGCCTTCATTGAGTTTACTGATGAAGAAAGTGCAAGGGCTGCTGTAAGCCTTTCTGGAACTATGCTGGGATATTACCCGTTGAGAGTGCTGCCTTCCAAAACTGCCATTGCACCTGTCAATCCGACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCTAGAACAATTTATTGCACAAACATCGACAAAAAGCTGACTCAAGCTGATGTGAAACACTTCTTTGAGTCTATCTGTGGAGAGGTTCAACGACTGAGGCTTCTTGGGGATTACCATCATTCAACTCGGATTGCTTTTGTTGAGTTCACAGTGGCTGACAGTGCAATTGCCGCCCTAAGCTGCAGTGGCGTGATTTTGGGTGCTCTGCCTATAAGGGTGAGTCCGTCAAAGACACCAGTCCGCGCTCGTTCTCCTCGTAGTCCATGA 1128 0.4566 MAVADNVSGKIGSSNQNLENNNTNNNIVVSSESTEVEKSKPRSDQDVTINNGVFNHQLPNGGNYSFKAHQLGQMHANGVQNQQFVMNNDGYVMNGENEGESFKREMRDLEELLSKLNPMAEEFVPPSLTNNHGYLAGPAAGFGYPNNYILLNNFANANGQTNRRRKAGYSTNGKRRVNHKVDMEKREEMIRRTVYVSDIDQLVTEEQLASLFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAAVSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFTVADSAIAALSCSGVILGALPIRVSPSKTPVRARSPRSP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02941 375 CDD RRM2_CID8_like 285 366 IPR034825 -
Vifa2g02941 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 267 IPR000504 GO:0003723
Vifa2g02941 375 Pfam Ataxin-2 C-terminal region 113 127 IPR009818 -
Vifa2g02941 375 CDD RRM1_CID8_like 190 269 IPR034823 -
Vifa2g02941 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 365 IPR000504 GO:0003723
Vifa2g02941 375 Coils Coil 92 112 - -
Vifa2g02941 375 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 111 370 - -
Vifa2g02941 375 SUPERFAMILY RNA-binding domain, RBD 280 370 IPR035979 GO:0003676
Vifa2g02941 375 SMART rrm1_1 193 263 IPR000504 GO:0003723
Vifa2g02941 375 SMART rrm1_1 290 361 IPR000504 GO:0003723
Vifa2g02941 375 SUPERFAMILY RNA-binding domain, RBD 182 268 IPR035979 GO:0003676
Vifa2g02941 375 MobiDBLite consensus disorder prediction 1 53 - -
Vifa2g02941 375 FunFam Polyadenylate-binding protein-interacting protein 11 155 269 - -
Vifa2g02941 375 FunFam Polyadenylate-binding protein-interacting protein 10 283 361 - -
Vifa2g02941 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 257 IPR000504 GO:0003723
Vifa2g02941 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 353 IPR000504 GO:0003723
Vifa2g02941 375 Gene3D - 276 372 IPR012677 -
Vifa2g02941 375 Gene3D - 154 269 IPR012677 -
Vifa2g02941 375 MobiDBLite consensus disorder prediction 8 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02941 Vifa-Chr2 837260496 837263544 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02941 191 353 Eukaryotic Initiation Factors Gene Family AT1G34140 25.150 2.88e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02941 - - gmx:106794116 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02941 2 837260496 837263544 Vifa2g02941 2 837260496 837263544 ECH