Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02939 ATGTCGCCCACAAGACAAACCAACAACAATACGATGATGAGTCCAAACGTTGTTGTTCCGAACCATAGTAGTAAGATTTTTGTCGGAGGATTGGCTTGGAAAACCAAAACAGACACACTGAAAAGCCATTTTGATCAGTTTGGTGAGATTCTTGAAGCTGTTGTCATCATTGACAGAGCCACCGGAAAATCAAAAGGATATGGCTTTGTTACTTTTAAGGATCCAAATTCTGCTATAATAGCTTGTCAGAATCCTAATCCCGTGATTGATGGAAGAAGAACTAATTGTAATCTTGCAACTCAAAAATCCAATCCATCATCATCAATAGGAAGAAGGAATCTCAATAGTCCTTCATGGAACACTGCACCATTACAATTTTCAAGCTCCTCTAATTATTTTTATTATTATAATCAACTACCTCAATATGCATATCCTTATCCAGTTTATAGGTACCCTTACCCTGGATATCTTCGCCCACAAGACATTTATGGCATGAACTATCTTAATGTACATGGTGGACCACAATTTCCAGTTCCTCCGTTGTATCCAGATCCACTATATTACCAACCATTTTATGGGCATAGTAAGCATTTAGTTTCAACATCATATGGGAAAAAGACACATTTCCCTGGACCTATTACTAGCACTGGAGTAGTCACAGAAATAGGAGCTGCAACAAGAGTGGTGGAATCTCCCAAAGATCAAACATCTTCAAATTAA 720 0.3792 MSPTRQTNNNTMMSPNVVVPNHSSKIFVGGLAWKTKTDTLKSHFDQFGEILEAVVIIDRATGKSKGYGFVTFKDPNSAIIACQNPNPVIDGRRTNCNLATQKSNPSSSIGRRNLNSPSWNTAPLQFSSSSNYFYYYNQLPQYAYPYPVYRYPYPGYLRPQDIYGMNYLNVHGGPQFPVPPLYPDPLYYQPFYGHSKHLVSTSYGKKTHFPGPITSTGVVTEIGAATRVVESPKDQTSSN 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02939 239 SMART rrm1_1 25 97 IPR000504 GO:0003723
Vifa2g02939 239 SUPERFAMILY RNA-binding domain, RBD 21 111 IPR035979 GO:0003676
Vifa2g02939 239 Gene3D - 2 114 IPR012677 -
Vifa2g02939 239 PANTHER BOULE-RELATED 24 195 - -
Vifa2g02939 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 84 IPR000504 GO:0003723
Vifa2g02939 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02939 Vifa-Chr2 836125490 836126765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02939 26 102 C2H2 Transcription Factor Family AT2G19380 44.156 1.77e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02939 - - cam:101508568 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02939 2 836125490 836126765 Vifa2g02939 2 836125490 836126765 ECH