Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02937 ATGATCCATATACAACATATTTTGCTTCTATGTTTCCTACTTGATAATTTTCATTTAATCATTTGCAACAACAATAACAACACAGATAGAGATATCCTTCTATCTTTCAAATCACAACTAACTGATCCAAACAATGCTTTGTCCAGTTGGAGACAAGATTCTAATCATTGTACCTGGTATGGTGTCAACTGTTCAAAACTTGGTGAAAGAGTTCAATCTCTCACCTTATTAGGACTTAGTCTCTCTGGTACACTTCCACCACAATTGGGTCAACTGCATAATCTACAAAGTTTAGACTTTTCTGTCAATAATCTCACAGGTGAAATCCCTTCAACTTTTGGCAATCTCATTTCTCTTGAGAATCTTTCTTTGAAAAGGAACAAGTTTATTGGTGAGATTCCAATTGAATTGGGCAATCTCCATAATCTTTCAAGACTTCAACTCTCGGTGAACAATTTCACTGGCAAGTTTCCTACTTCTATTTTCTTCAACCTCTCTTCTTTAGTTTTCTTATCCCTCACACAGAACAATCTATCAGGCGAGTTGCCGCAAAATTTTGGCAACACCTTACCAAATTTAACCATACTTGCTCTTGCAATCAATAGGTTTGAAGGGGTGATTCCAAATTCTATATCCAATTCATCACATCTTCAAATTATTGATCTTGCTAACAATAGATTTCATGGACCAATACCTCTTTTCAACAACCTGAAAAACCTCACTCAATTGAGACTAGGTAATAACTTTCTCACTTCCACAACATCATTGAATTTAAAGTTCTTTGATTCACTTAGAAACTCCACTCAGTTGCAAATCCTTAAGGTCAATGGTAACAACTTGACTGGTGAACTTCCAAATTCTGTTGCCTATCTTTCAGGCAATCTGCAGCAGTTCTGTGTTTCTAATAATCAGCTAAATGGAAGCATTCCTAAAGGAATCAACAAGTTTCAAAATCTCACATCCTTCGCTTTTGAACAGAATTATTTCACCGGCGAGTTACCAATAGAACTGGGAACACTCAAGAAATTGGAGCAGCTTTGGATATACCAAAATAGATTGTTTGGTGAAATTCCAGACATATTTGGAAATTTTACAAATCTGTATGAACTTGAAATAAGAAACAACCAGTTCTCAGGTAGAATTCCAGCAAGCATCGGACAATGCAAGAAATTGAGCTATCTTGACATGGGAATGAATAAGCTTGTCGGTGTCATACCAACGGAGATTTTTCAACTCTCTGGATTGACAACTTTGTACTTACGTGGAAACTCTTTGAATGGTTCGCTTCCTCCTGAACTCAAGATGGATCAGCTAGAGTTCATGATTGTTTCGGACAACAAGCTGTCGGGGAACATTCCTAAAATCGAAGTAAATGGATTGAAGGTACTTCAGATGGCAAGAAATAAATTTAGTGGCTCAATTCCAAATAGTCTAGGAGATTTAGCATCCCTTGAGACTTTGGATCTATCATCAAACAATCTCACCGGTCCAATTCCTGAGAGTTTAGAAGAGCTTAAGTATATGGTGAGTTTAAATTTGTCTTTCAACAAATTGGAAGGAGAGGTTCCAATGAAAGGTGTTTTTATGAACCTAAGCCAGGTTGATCTTCAAGGTAACAAAAAAATATGTGGCCATAGCAATCAAGTTATGCACAAATTGGGAGTCACTTTGTGTGTTGCGGGTAAAAAGAACAAGAGAAACAGTTTACTCCCTATCATACTACCGATTATAGGCGCGACTGTTTTGCTCGTTTCAATTCTTTGTCTGATGTGGATGCTATATTCCTTTAAGATGGAAAAAAAGGACGATAAAACAAGTTTTTCATCAACTCCTCTAAAGGGGTTGCCTCAAAATATATCCTATGGTGATATTAAGCTTGCTACAAACAATTTTTCAGCTACAAACTTGGTCGGAAGAGGAGGCTTTGGTTCTGTTTACAAGGGTGTTTTCAACATTAGCACTTACGAAAGTCAAACCACCACACTTGCTGTTAAAGTTTTTGACCAGCAACAAAGCAAAGCCTCTCAGAGTTTTAGTGCAGAATGTGAAACTTTGAAAAACGTTAGGCATCGGAATCTTGTCAAGGTGATCACTTCTTGTTCTAGTACTGATCACAAAGGGGATGATTTTAAGGCCCTTGTTATGCATTTCATTCCTAATGGTAATTTGGAAATGAGTTTATACCCAGAAGATCTCGAGTCGGGATCTTTACTAACCTTGTTGCAAAGGTTAAACATTGCTATTGATGTTGCATCTGCCATGGACTACTTGCACCATGATTGTGATCCACCAATAGTCCATTGTGATCTGAAACCACTCAATGTCCTACTAGATGAAGATATGGTTGCACATGTAGCAGATTTTGGATTGGCAAGGTTTCTCTCTCAAAATGCATCAGAGAAACACAGCAGCACTCTAGAACTGAATGGATCAATCGGCTACATTGCCCCAGAATATGGTCTAGGAGGCAAGGCTTCAACTAGGGGTGATGTGTACAGTTTTGGGATCCTACTACTAGAGATGTTCATAGCCAAGAAACCAACAGATGAAATATTCAAAGAAGGATTAAACATCAACAATTTTGTATCAGAAATGGATGCAAAGCAATTACTGAATATTGTTGATCAAAGGCTTATTAACCATTATGAATATTCAACACAAATTTTCAGCAGCGATAGTCATAGGGGTGAATCAGGCGAAATCAGCTATAGTGATGGTAGTAACACATACTGGACTGACAAAGCTGAGGAGTGCATAGCTTCTGCAATGAGGATCGGCTTGTCATGTGTAGCATATCATCCCAAAGATAGGTGGACCATGAGAGAAGCCTTATCAAAATTGCATGTAATTAAGCAGTCAGTTCTTGGCTTGTGA 2874 0.3775 MIHIQHILLLCFLLDNFHLIICNNNNNTDRDILLSFKSQLTDPNNALSSWRQDSNHCTWYGVNCSKLGERVQSLTLLGLSLSGTLPPQLGQLHNLQSLDFSVNNLTGEIPSTFGNLISLENLSLKRNKFIGEIPIELGNLHNLSRLQLSVNNFTGKFPTSIFFNLSSLVFLSLTQNNLSGELPQNFGNTLPNLTILALAINRFEGVIPNSISNSSHLQIIDLANNRFHGPIPLFNNLKNLTQLRLGNNFLTSTTSLNLKFFDSLRNSTQLQILKVNGNNLTGELPNSVAYLSGNLQQFCVSNNQLNGSIPKGINKFQNLTSFAFEQNYFTGELPIELGTLKKLEQLWIYQNRLFGEIPDIFGNFTNLYELEIRNNQFSGRIPASIGQCKKLSYLDMGMNKLVGVIPTEIFQLSGLTTLYLRGNSLNGSLPPELKMDQLEFMIVSDNKLSGNIPKIEVNGLKVLQMARNKFSGSIPNSLGDLASLETLDLSSNNLTGPIPESLEELKYMVSLNLSFNKLEGEVPMKGVFMNLSQVDLQGNKKICGHSNQVMHKLGVTLCVAGKKNKRNSLLPIILPIIGATVLLVSILCLMWMLYSFKMEKKDDKTSFSSTPLKGLPQNISYGDIKLATNNFSATNLVGRGGFGSVYKGVFNISTYESQTTTLAVKVFDQQQSKASQSFSAECETLKNVRHRNLVKVITSCSSTDHKGDDFKALVMHFIPNGNLEMSLYPEDLESGSLLTLLQRLNIAIDVASAMDYLHHDCDPPIVHCDLKPLNVLLDEDMVAHVADFGLARFLSQNASEKHSSTLELNGSIGYIAPEYGLGGKASTRGDVYSFGILLLEMFIAKKPTDEIFKEGLNINNFVSEMDAKQLLNIVDQRLINHYEYSTQIFSSDSHRGESGEISYSDGSNTYWTDKAEECIASAMRIGLSCVAYHPKDRWTMREALSKLHVIKQSVLGL 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02937 957 SUPERFAMILY L domain-like 292 546 - -
Vifa2g02937 957 Gene3D Transferase(Phosphotransferase) domain 1 718 955 - -
Vifa2g02937 957 Pfam Leucine Rich Repeat 94 116 IPR001611 GO:0005515
Vifa2g02937 957 Gene3D Ribonuclease Inhibitor 189 233 IPR032675 -
Vifa2g02937 957 Gene3D Phosphorylase Kinase; domain 1 613 717 - -
Vifa2g02937 957 ProSitePatterns Protein kinases ATP-binding region signature. 637 665 IPR017441 GO:0005524
Vifa2g02937 957 ProSiteProfiles Protein kinase domain profile. 631 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02937 957 PANTHER RECEPTOR-LIKE PROTEIN 55 318 949 - -
Vifa2g02937 957 Pfam Leucine rich repeat 365 425 IPR001611 GO:0005515
Vifa2g02937 957 Pfam Leucine rich repeat 459 518 IPR001611 GO:0005515
Vifa2g02937 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 765 777 IPR008271 GO:0004672|GO:0006468
Vifa2g02937 957 Gene3D Ribonuclease Inhibitor 25 188 IPR032675 -
Vifa2g02937 957 Pfam Protein tyrosine and serine/threonine kinase 634 852 IPR001245 GO:0004672|GO:0006468
Vifa2g02937 957 Gene3D Ribonuclease Inhibitor 234 552 IPR032675 -
Vifa2g02937 957 ProSiteProfiles Leucine-rich repeat profile. 483 506 IPR001611 GO:0005515
Vifa2g02937 957 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Vifa2g02937 957 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 718 956 - -
Vifa2g02937 957 FunFam LRR receptor-like serine/threonine-protein kinase EFR 256 564 - -
Vifa2g02937 957 SUPERFAMILY Protein kinase-like (PK-like) 606 949 IPR011009 -
Vifa2g02937 957 SMART LRR_sd22_2 412 440 - -
Vifa2g02937 957 SMART LRR_sd22_2 92 124 - -
Vifa2g02937 957 SMART LRR_sd22_2 481 504 - -
Vifa2g02937 957 SMART LRR_sd22_2 292 321 - -
Vifa2g02937 957 SMART LRR_sd22_2 364 396 - -
Vifa2g02937 957 SMART LRR_sd22_2 340 359 - -
Vifa2g02937 957 SMART LRR_sd22_2 237 258 - -
Vifa2g02937 957 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 26 188 - -
Vifa2g02937 957 FunFam LRR receptor-like serine/threonine-protein kinase EFR 602 717 - -
Vifa2g02937 957 SMART LRR_typ_2 412 435 IPR003591 -
Vifa2g02937 957 SMART LRR_typ_2 340 363 IPR003591 -
Vifa2g02937 957 SMART LRR_typ_2 481 505 IPR003591 -
Vifa2g02937 957 SMART LRR_typ_2 364 388 IPR003591 -
Vifa2g02937 957 SMART LRR_typ_2 190 213 IPR003591 -
Vifa2g02937 957 SMART LRR_typ_2 140 164 IPR003591 -
Vifa2g02937 957 SMART LRR_typ_2 92 115 IPR003591 -
Vifa2g02937 957 SMART LRR_typ_2 237 263 IPR003591 -
Vifa2g02937 957 SMART LRR_typ_2 165 188 IPR003591 -
Vifa2g02937 957 SUPERFAMILY L domain-like 27 305 - -
Vifa2g02937 957 SMART serkin_6 631 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02937 Vifa-Chr2 834495699 834498650 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02937 26 952 Receptor kinase-like Gene Family AT3G47570 38.081 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa2g02937 PK_Tyr_Ser-Thr 4.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02937 - - mtr:11428205 1532.69