Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02934 ATGATCCGTGTACATCATATTTTGCTCTTATGTTTCCTACTTGATAATTTTCATTTCATCATTTGCAACAACAATAACAACACAGATAGAGATATCCTTCTATCTTTCAAATCACAACTAACTGATCCAAACAATGCTTTGTCCAGTTGGAGACAAGATTCTAATCATTGTACCTGGTATGGTGTCAACTGTTCAAAAGTTGGTGAAAGAGTTCAATCTCTCACATTATCAGGACTTAGTCTCTCTGGTGAAATCCCTTCAACTTTTGGCAATCTCTTTTCTCTTAAGAATCTTTCTTTGGCAAGGAACAAGTTTGTTGGTGAGATTCCAATTGAATTGGGCAATCTCCATAATCTTTCAAGACTTCAACTCTCAGAAAATAATTTTACCGGCAGGTTTCCTACTTCGATTTTCTTCAACCTCTCTTCCTTAGTTTTCTTATCCCTCACAAAGAACAACCTATCAGGCGAGTTGCCGCAAAATTTCGGCCACGCCTTTCCAAATTTAACTACACTTGCTCTTGCAACCAATAGGTTTGAAGGGGTGATTCCAAATTCTATATCCAATTCATCACATCTTCAAATTATTGATCTTGCTAACAATAGATTTCATGGGCCAATACCTCTTTTCAATAACCTGAAAAACCTCACTCATTTGACACTAGGTAATAACTTTCTCACTTCTACAACATTATTGAATTTAAAGTTCTTTGATTCACTTAGAAACTCCACTCAGTTGCAAATTCTTATGGTCAATGACAACAACTTGACCGGTGACCTTCCAAATTCTGTTGCCTATCTCTCAGGCAATCTACAACAGTTCTGTGTTTCTAATAATCAGCTAAATGGAAGCATTCCTAAAGGAATGGACAAGTTTCAAAATCTCATATCCTTCTCTTTTGAACAAAATTATTTCACCGGTGAGTTACCATTAGAATTAGGATCACTCAAGAAATTGGAGCAGCTATTGATATACCAAAACAGATTGTCTGGTGAAATTCCTGATATATTTGGCAATTTTACAAATCTGTATATGCTTTCACTAGGAAACAACCAATTCTCAGGTAGAATTCACGCGAGCATTGGAAAATGCAAGAGATTGAGTCTTCTTGACTTGGAAATGAATAAGCTTGTTGGTGTCATACCAAAAGAGATTTTTCAACTCTCTGGATTGACAACTTTGTACTTACACGGAAACTCTTTGAATGGTTCTCTTCCTCCTGAATTCAAGATGGAGCAGCTACAGACCATGATTGTTTCAGACAACAAGCTGTCGGGGAACATTCCTAAAATCGAAGTAAACGTCTTGAAGATACTTAAGATGGCAAGAAATAAATTTAGTGGCTCAATTCCAAACAGTCTAGGAGATTTAGCATCCCTTGTGACCTTGGATTTATCATCAAACAATCTCACTGGCCCAATTCCTGAGAGTCTAGAAAAGCTCGAGTATATGGTGAGGTTAAATTTGTCTTTCAACAAATTGGAAGGAGAGGTTCCTATGAAAGGTGTTTTTATGAACCTAAGCCAGGTTGATCTCCAAAGTAACAACAGATTATGTGGCTTTACCAATCAAGTTGTGCACAAGTTGGGAGTCACTTTGTGTGTTGCAGGTAAAAAAGAGAAGAGAAACATTCTACTCCCTATCATACTAGGGGTTATAGGTGCGATTGTTTTGTTCGCTTCAATGCTCTATCTGTTGTGGCTGCTAATTTCCTTAAAGAAACATGAGGAGGAGAAAAGAAGTTTGTCATCAACTCCTCTGAAGGGTTTGCCTCAAAATATATCCTATGGTGATATTAGGCTTGCTACAGACAATTTTTCTTCTACAAACTTGGTTGGAAAAGGAGGCTTTGGTTCTGTTTACAAGGGTGTCTTCAACATCAACGCTTACGAAAGTCAAACCACCATACTTGCTGTTAAAGTTCTTGACCTTCAACAAAGAAAAGCTACTCAGAGTTTTAGTGCAGAATGTGAAGCTTTGAAAAACGTTAGGCATCGGAATCTTGTCAAGGTGATCACTTCTTGCTCTAGCACTGACTACAAGGGGGATGATTTTAAGGCACTGGTTATGCAATTCATGCCTAATGGTAATTTGGAGATGAATTTATACCCGGAAGATCTTGAGTCAGGATCTTTACTAACCTTGTTACAAAGGTTGAATGTTGCTATTGATGTTGCATCTGCCATGGACTACTTGCACCATGATTGTGATCCACCAATAGTCCATTGTGATCTTAAACCTGCCAATGTCCTGCTAGATGAAGATATGGTTGCACATGTAGCAGATTTTGGATTGGCAAGGTTTCTCTCTCAAAATCCATCAGAGAAACATAGCAGCACGCTGGAACTGAAAGGGTCAATTGGCTATATTGCCCCAGAATATGGTCTAGGATACAAGGCTTCAACTAGTGGTGATGTGTACAGTTTTGGGATCCTACTACTAGAGATGTTCATAGCCAAAAAACCAACAGATGAAATGTTCAAAGAAGGACTAAACATGAACAATTTTGAGAAGAAATTACTGAATATTGTTGATCAAAGGCTTATTAACCATTATGAATATTCAACACAAAATTTCGGCAGCGATAGTCATAGTGGTGAATCCGGCGACATTAGCTATAGTGATGGTAGTAACACATACAAAGCTGAGGAGTGCATAGCTTCTGCAATGAGAATCGGCTTGTCATGTGTAGCACATCATCCCAAAGATAGGTTGACCATGAGAGAAGCCTTATCAAAATTGCATGTAATTAAGCAGTTTATACTAGGCTTGTAA 2775 0.3791 MIRVHHILLLCFLLDNFHFIICNNNNNTDRDILLSFKSQLTDPNNALSSWRQDSNHCTWYGVNCSKVGERVQSLTLSGLSLSGEIPSTFGNLFSLKNLSLARNKFVGEIPIELGNLHNLSRLQLSENNFTGRFPTSIFFNLSSLVFLSLTKNNLSGELPQNFGHAFPNLTTLALATNRFEGVIPNSISNSSHLQIIDLANNRFHGPIPLFNNLKNLTHLTLGNNFLTSTTLLNLKFFDSLRNSTQLQILMVNDNNLTGDLPNSVAYLSGNLQQFCVSNNQLNGSIPKGMDKFQNLISFSFEQNYFTGELPLELGSLKKLEQLLIYQNRLSGEIPDIFGNFTNLYMLSLGNNQFSGRIHASIGKCKRLSLLDLEMNKLVGVIPKEIFQLSGLTTLYLHGNSLNGSLPPEFKMEQLQTMIVSDNKLSGNIPKIEVNVLKILKMARNKFSGSIPNSLGDLASLVTLDLSSNNLTGPIPESLEKLEYMVRLNLSFNKLEGEVPMKGVFMNLSQVDLQSNNRLCGFTNQVVHKLGVTLCVAGKKEKRNILLPIILGVIGAIVLFASMLYLLWLLISLKKHEEEKRSLSSTPLKGLPQNISYGDIRLATDNFSSTNLVGKGGFGSVYKGVFNINAYESQTTILAVKVLDLQQRKATQSFSAECEALKNVRHRNLVKVITSCSSTDYKGDDFKALVMQFMPNGNLEMNLYPEDLESGSLLTLLQRLNVAIDVASAMDYLHHDCDPPIVHCDLKPANVLLDEDMVAHVADFGLARFLSQNPSEKHSSTLELKGSIGYIAPEYGLGYKASTSGDVYSFGILLLEMFIAKKPTDEMFKEGLNMNNFEKKLLNIVDQRLINHYEYSTQNFGSDSHSGESGDISYSDGSNTYKAEECIASAMRIGLSCVAHHPKDRLTMREALSKLHVIKQFILGL 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02934 924 SUPERFAMILY L domain-like 269 521 - -
Vifa2g02934 924 ProSitePatterns Serine/Threonine protein kinases active-site signature. 740 752 IPR008271 GO:0004672|GO:0006468
Vifa2g02934 924 SUPERFAMILY Protein kinase-like (PK-like) 583 916 IPR011009 -
Vifa2g02934 924 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 26 189 - -
Vifa2g02934 924 FunFam LRR receptor-like serine/threonine-protein kinase EFR 232 540 - -
Vifa2g02934 924 Gene3D Ribonuclease Inhibitor 139 190 IPR032675 -
Vifa2g02934 924 Gene3D Ribonuclease Inhibitor 28 138 IPR032675 -
Vifa2g02934 924 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 693 923 - -
Vifa2g02934 924 SMART serkin_6 606 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02934 924 SMART LRR_typ_2 340 364 IPR003591 -
Vifa2g02934 924 SMART LRR_typ_2 166 189 IPR003591 -
Vifa2g02934 924 SMART LRR_typ_2 388 411 IPR003591 -
Vifa2g02934 924 SMART LRR_typ_2 213 239 IPR003591 -
Vifa2g02934 924 SMART LRR_typ_2 116 140 IPR003591 -
Vifa2g02934 924 SMART LRR_typ_2 457 481 IPR003591 -
Vifa2g02934 924 SMART LRR_typ_2 141 164 IPR003591 -
Vifa2g02934 924 SMART LRR_typ_2 316 339 IPR003591 -
Vifa2g02934 924 Gene3D Transferase(Phosphotransferase) domain 1 693 921 - -
Vifa2g02934 924 Gene3D Ribonuclease Inhibitor 209 528 IPR032675 -
Vifa2g02934 924 PANTHER LEUCINE RICH REPEAT KINASE 2 240 918 - -
Vifa2g02934 924 FunFam LRR receptor-like serine/threonine-protein kinase EFR 577 692 - -
Vifa2g02934 924 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Vifa2g02934 924 ProSiteProfiles Protein kinase domain profile. 606 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02934 924 Gene3D Phosphorylase Kinase; domain 1 588 692 - -
Vifa2g02934 924 ProSitePatterns Protein kinases ATP-binding region signature. 612 640 IPR017441 GO:0005524
Vifa2g02934 924 SUPERFAMILY RNI-like 70 354 - -
Vifa2g02934 924 Pfam Protein tyrosine and serine/threonine kinase 610 829 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02934 Vifa-Chr2 833929486 833932569 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02934 74 919 Receptor kinase-like Gene Family AT3G47570 41.839 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa2g02934 PK_Tyr_Ser-Thr 3.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02934 - - mtr:11428205 1411.36