Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02933 ATGCAGACCAAAAGAAGGAACAAGAACAACAACACTAGTAGTTTTCTTGAGTCTATGCAGAGTTTTGAAGGATTATCTAATAAGAAGATGATGATGCAGCATCAGCATCTTAATCATGATTCTTCTGCTGCTCATAGTTATGGTCCCACAGTACACAACATGTCTTTTGGTAGTCACTCTTCTTCTCTTGCTGCTACTACCATTGATAATGGCCTTGTATCTTTAAATTTGCAGCCTTTTCACAACATTAACCCTTTCACAAGCTCTCAATGGAGAGAGCTTGAGATACAAGTTATGATTTACAAGTACTTGGTGGCTTCTCTTCCTGTTCCTTCTTATCTGCTCTCATCCATTCCTTCTTCATCTATGATGGATGGTGGTTTCAATACGAGGTTGTCTTCAAGTAGGAACAGTAGTACTGATCCAGAGGCAGAAGCAGGTAGGTGCAGAAGAACAGATGGTAAGAAATGGAGATGTTCTAGATATGTTGCTCCTAATAACAAGTATTGTGAGCGACATATGCATAGAGGTAGTCAGCGTTCAAGAAAGCCTGTGGAACTTCACGCCAATGACATTAGCCATCATCAAATCAAGAGGATCCCTATTCCAACTACAAGAAAATATGGTGGAACTTCATCACAATTTCTTGCTTCCAGTGCTTTTCATCCTTATCTCCAATCACCAATTTCCTTGGATAATAGCATCTTTGGTGTCAAATTTGCTCCCAGTTTTGACCCTTCAAATAAGCAACCAAGGGGCTTCGAGTGGATGCCGAATGGAGATCCAATATCTCTTGGTGCTTCTAACTCAGGATGGAACTCTCTGATGCTTGGAATGACCAATGAAAGTTCATATCTCAATAATAACATTGAGTCTCACTATCTGAATTCATTTCCACAATACAATAGTTTAGAACTTTCTCAACAAGAAAGACCATTTTCTCTCTTATATAATCCTGTTCCAATGCAAACTCTCCAAACTGAGAAACCAAGAGGGTTTAGTTTCACTGATACTTGGTCTAATGCAAACACAGTAGTAAACAACGCCAACAACAACAACAACAACAACGCTTCTGCATCAGTAGCTAAATCATCCCTTTCATCTCTTGATCTATCAATGGGAGGTCCACTAGCTGAAGTTCTAAGGCCAAGCAAAGTAACCTCCATCAGTGATTCAACAAGCTCAAATCCATCATCATCTGTCACAACAAACCGTGTCGAATCCATTGGAACTTCAGGAACAGGAATGATATCATCTCCATCTGTTGTTTTCCATAATAAAACTCTTTCTTCGTTCTCTGATAGCAGTGGTAATAGCAGTCCAACTTGCATCATCAAGGGCCAATTCTGA 1350 0.397 MQTKRRNKNNNTSSFLESMQSFEGLSNKKMMMQHQHLNHDSSAAHSYGPTVHNMSFGSHSSSLAATTIDNGLVSLNLQPFHNINPFTSSQWRELEIQVMIYKYLVASLPVPSYLLSSIPSSSMMDGGFNTRLSSSRNSSTDPEAEAGRCRRTDGKKWRCSRYVAPNNKYCERHMHRGSQRSRKPVELHANDISHHQIKRIPIPTTRKYGGTSSQFLASSAFHPYLQSPISLDNSIFGVKFAPSFDPSNKQPRGFEWMPNGDPISLGASNSGWNSLMLGMTNESSYLNNNIESHYLNSFPQYNSLELSQQERPFSLLYNPVPMQTLQTEKPRGFSFTDTWSNANTVVNNANNNNNNNASASVAKSSLSSLDLSMGGPLAEVLRPSKVTSISDSTSSNPSSSVTTNRVESIGTSGTGMISSPSVVFHNKTLSSFSDSSGNSSPTCIIKGQF 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02933 449 ProSiteProfiles WRC domain profile. 143 187 IPR014977 -
Vifa2g02933 449 MobiDBLite consensus disorder prediction 387 413 - -
Vifa2g02933 449 ProSiteProfiles QLQ domain profile. 85 120 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa2g02933 449 SMART QLQ_2 84 120 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa2g02933 449 PANTHER GROWTH-REGULATING FACTOR 5 36 373 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vifa2g02933 449 Pfam QLQ 85 118 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa2g02933 449 Pfam WRC 144 186 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02933 Vifa-Chr2 833724953 833726656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02933 85 189 GRF Transcription Factor Family AT4G37740 53.043 2.27e-30 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vifa2g02933 WRC 6.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02933 - - mtr:11444759 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02933 2 833724953 833726656 Vifa2g02933 2 833724953 833726656 ECH