Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02925 ATGGGTCATTGCTGCAGCAAAAACACTGCAGTCGACACCGATACCGTCGCAACCGATCACAACCTCAAATCATCTAACCACGATGTATCACAAACTTCCCACCCTGCCGGAAACTCAGTCTCCGGCGTCAGTGATGCTACTCCGGGGAGACAAACCCCGGCGACATCGTTTTCCACTAGTCCTTTCAATAGTCCTCTTCCCGCAGGTGTGGCGCCGTCACCGGCTGCCAGGACTCCGGGGAGGAAATTCAGGTGGCCGCTTCCTCCTCCGTCTCCCGCAAAGCCGATAATGGCGGCTTTGCTACGGAGGCAGGGGAAGACGAAACCGAAAGACGGACCGATACCTGAGGAGCAAGGGGAGAGTGGTGAAGGAGAGAGGACGTTGGATAAGAGCTTTGGATATGGGAAGAATTTTGGGGCGAAATTTGAGCTTGGGAAGGAAGTTGGTCGAGGGCATTTTGGTCATACTTGTTGGGCTAAAGGTAAGAAAGGTGAACTCAAAGGAGTATCAGTCGCGGTGAAAATCATAACCAAAGCTAAGATGACTTCGGCAATAGCAATTGAAGACGTGAGAAGGGAGGTGAAAATGTTGAAAGCCTTGTCCGGACACAGGAATTTAGTCAAGTTTTATGAAGCATTTGAGGATGTGAATAATGTCTACATTGTGATGGAGTTATGCGAGGGTGGAGAATTACTGGACAGAATTCTAGATAGAGGTGGAAGATACCCAGAGGAGGATGCCAAAGTTATTCTTCTACAAATTCTGAATGTAGTTGCCTTTTGTCATCTTCAAGGCGTTGTTCATCGCGATCTAAAACCAGAGAATTTTCTTTTTCTCTCAAAAGATGAGGATGCTGTTCTGAAAGTTATTGATTTTGGTCTATCTGATTTTGTTCGGCCAGATCAACGCCTTAATGATATTGTTGGTAGTGCCTATTATGTTGCACCTGAAGTGCTCCATAGATCTTACAGTGTTGAAGGAGACTTATGGAGTATTGGAGTTATATCGTACATATTGTTATGTGGAAGTAGACCGTTTTGGGCACGGACTGAATCAGGAATCTTCCGGTCTGTGTTAAGAGCAAACCCTAACTTTGATGATTCACCTTGGCCATCAATATCACCAGAAGCTAAAGACTTTGTGAAGAGACTTTTGAACAAGGACCATCGGAAAAGGATGACAGCTGCTCAAGCTCTATCTCACCCATGGTTGAAAAATGAAGGAAATGCCATTCCTTTAGATATTCTAATTTACAAGTTAGTCAAGTCATATGTGCGTGCCTCGCCTTTGAAACGTTCGGCATTGAAGGCTCTCTCAAACGCTTTACCAGAGGACGAGGTTACCTACCTTAAAGCACAATTTAGCCTCTTGGAACCTAAAGATGGTTGCATTTCACTTGAGAATTTCAGAGTTGCTCTCATGAAAAATGCAACTGATGCCATGAGGGAAGCAAGGGTCCCTGACATTCTAAATTTGATGGATCCACTCTCCTATAAAAAACTGGATTTCGAAGAGTTTTGCGCTGCCGCAATCAGTGTATACCAGCTTGAAGTTCATCCAGAATGGGATAAAATTTCCACCACAGCTTTTGATTATTTTGACGAGGCAGGGAACCGTGTCATTTCACTCGAGGAGTTAGCACAGGAGATGAATTTGGGTCCTTCAGCTTACTCTTTAATGGGTGACTGGATCAGAAAATCTGACGGAAAACTCAGCTTGGTCGGTTATACAAAGTATTTGCATGGTGTCACAATTCGTAGTACAAATACAAGACACAGATAG 1782 0.4467 MGHCCSKNTAVDTDTVATDHNLKSSNHDVSQTSHPAGNSVSGVSDATPGRQTPATSFSTSPFNSPLPAGVAPSPAARTPGRKFRWPLPPPSPAKPIMAALLRRQGKTKPKDGPIPEEQGESGEGERTLDKSFGYGKNFGAKFELGKEVGRGHFGHTCWAKGKKGELKGVSVAVKIITKAKMTSAIAIEDVRREVKMLKALSGHRNLVKFYEAFEDVNNVYIVMELCEGGELLDRILDRGGRYPEEDAKVILLQILNVVAFCHLQGVVHRDLKPENFLFLSKDEDAVLKVIDFGLSDFVRPDQRLNDIVGSAYYVAPEVLHRSYSVEGDLWSIGVISYILLCGSRPFWARTESGIFRSVLRANPNFDDSPWPSISPEAKDFVKRLLNKDHRKRMTAAQALSHPWLKNEGNAIPLDILIYKLVKSYVRASPLKRSALKALSNALPEDEVTYLKAQFSLLEPKDGCISLENFRVALMKNATDAMREARVPDILNLMDPLSYKKLDFEEFCAAAISVYQLEVHPEWDKISTTAFDYFDEAGNRVISLEELAQEMNLGPSAYSLMGDWIRKSDGKLSLVGYTKYLHGVTIRSTNTRHR 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02925 593 MobiDBLite consensus disorder prediction 16 66 - -
Vifa2g02925 593 MobiDBLite consensus disorder prediction 104 128 - -
Vifa2g02925 593 FunFam CDPK-related kinase 1 135 230 - -
Vifa2g02925 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Vifa2g02925 593 ProSiteProfiles Protein kinase domain profile. 142 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02925 593 Gene3D Transferase(Phosphotransferase) domain 1 232 423 - -
Vifa2g02925 593 FunFam Calcium-dependent protein kinase SK5 314 409 - -
Vifa2g02925 593 PANTHER SERINE/THREONINE-PROTEIN KINASE 126 565 - -
Vifa2g02925 593 Pfam Protein kinase domain 142 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02925 593 CDD STKc_CAMK 141 403 - -
Vifa2g02925 593 MobiDBLite consensus disorder prediction 16 128 - -
Vifa2g02925 593 Gene3D - 424 552 - -
Vifa2g02925 593 FunFam CDPK-related kinase 1 439 511 - -
Vifa2g02925 593 SUPERFAMILY EF-hand 437 581 IPR011992 -
Vifa2g02925 593 SUPERFAMILY Protein kinase-like (PK-like) 141 429 IPR011009 -
Vifa2g02925 593 Gene3D - 443 511 - -
Vifa2g02925 593 FunFam CDPK-related kinase 3 134 306 - -
Vifa2g02925 593 ProSitePatterns Protein kinases ATP-binding region signature. 148 174 IPR017441 GO:0005524
Vifa2g02925 593 Gene3D Phosphorylase Kinase; domain 1 136 231 - -
Vifa2g02925 593 SMART serkin_6 142 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02925 Vifa-Chr2 830468848 830474560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02925 1 587 EF-hand Containing Proteins AT3G50530 56.782 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa2g02925 Pkinase 8.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02925 - - gmx:100803631 1041.57