Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02912 ATGGAGGAAAGAGAGAATATTCTTCATGAAGGTGTTGAAACTAGTATGAGTTGTTTGGAGACATCAACTTTGAGTTCAAGGAAGAAAAACAAGAAGGTGGAGAATAAAAGAAGGTTTAGTGATGAACAGATAAGGTCACTAGAATGTATATTTGAGTCAGAATCAAAGCTGGAGCCAAGGAAGAAGATGCAACTTGCAAGAGATCTTGGTTTGCAGCCTAGACAAGTTGCTATATGGTTTCAAAACAGAAGAGCTAGGTGGAAATCAAAGAGGATTGAACAAGAATATAGAAAACTTAAAGTTGAGTATGATAATTTAGCTTTGAAGTTTCAGTCTCTTAAGGAAGAGAAAGAGTCTTTGCAATCAGAGGTTCAGAAGCTAAGTTATATGGTGGAAACATATCATGATGGTGGAAGGGAAGGTAAGGAAAACAGCACAGAAGATGGTGGATCAGGAAATGGATATAGAAATTGTATGGCTGAAACAAAGGAAAGGATTGCGAATGAGGGATTGGAGGAGAGAATGGTAATTTATTCAGATGATCAAAATGAAAGAAGCTTAACAAGGACTGAAAAAGTTGATGACAGAGAAAATCAGGTTTTGAGAAATGAAGAAATTCCTTTGACAGCACTTGAAAAATGGTACAATGTTGATCCAAGTGTTATCTTAGACCAGTCATGTAATAGTTCTCAATGGTTGGATTTTTGGCCTTAG 714 0.3641 MEERENILHEGVETSMSCLETSTLSSRKKNKKVENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKVEYDNLALKFQSLKEEKESLQSEVQKLSYMVETYHDGGREGKENSTEDGGSGNGYRNCMAETKERIANEGLEERMVIYSDDQNERSLTRTEKVDDRENQVLRNEEIPLTALEKWYNVDPSVILDQSCNSSQWLDFWP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02912 237 SUPERFAMILY Homeodomain-like 14 90 IPR009057 -
Vifa2g02912 237 MobiDBLite consensus disorder prediction 136 156 - -
Vifa2g02912 237 Coils Coil 82 130 - -
Vifa2g02912 237 PRINTS Lambda-repressor HTH signature 70 86 IPR000047 GO:0003677
Vifa2g02912 237 PRINTS Lambda-repressor HTH signature 61 70 IPR000047 GO:0003677
Vifa2g02912 237 ProSitePatterns 'Homeobox' domain signature. 65 88 IPR017970 GO:0000981|GO:0006355
Vifa2g02912 237 SMART HOX_1 33 94 IPR001356 GO:0003677
Vifa2g02912 237 Pfam Homeodomain 36 88 IPR001356 GO:0003677
Vifa2g02912 237 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 27 175 IPR045224 GO:0003700
Vifa2g02912 237 FunFam Homeobox-leucine zipper protein ATHB-7 17 90 - -
Vifa2g02912 237 Gene3D - 33 95 - -
Vifa2g02912 237 ProSiteProfiles 'Homeobox' domain profile. 30 90 IPR001356 GO:0003677
Vifa2g02912 237 CDD homeodomain 36 91 IPR001356 GO:0003677
Vifa2g02912 237 Pfam Homeobox associated leucine zipper 90 130 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02912 Vifa-Chr2 828319354 828320208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02912 8 236 Homeobox Transcription Factor Family AT2G46680 39.464 9.25e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa2g02912 Homeodomain 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02912 K09338 - gmx:100499926 300.056