Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02901 ATGAAGGGTTCATCAGAGAGAAAGTACATGCAAGAATTTCTCCTATACGCCGCAAGCGCAGCGTTGAGTTGTTTGGTATTATTCACCGGGCTCCATTACCTAGACCCCAGCCGTGAATCTTCCAAGAAAGCTCTCGAACACAAGAAAGCCATTGCAAAGCGTCTAGGTCGTCCCCTCATTCACACAGATCAATATGAGGATATAATAGCAGGCGATGTTATAAATCCTGACCACATTGATGTAGAGTTTGACTCCATTGGGGGACTGGAATCTATTAAACAAACTTTGTTTGAGCTTGTTATTCTACCCTTGAAACGCCCCGAGTTGTTTTCGCATGGTAAGCTCCTTGGACCATTAAAGGGGGTTCTGTTGTATGGACCCCCGGGCACTGGGAAAACCATGCTTGCCAAAGCTATTGCCAGGGAGTCTGGAGCGGTTTTCATTAATGTGAGGATATCCAACCTCATGAGCAAGTGGTTCGGAGACGCCTCAAAGCTTGTGTCGGCTGTATTTAGTTTGGCTTATAAGCTTCAGCCTGCCATCATATTCATTGATGAAGTAGACAGTTTTTTGGGTCAGCGTCGTCAATCAGATCACGAGGCTTTGTTAAACATGAAAACTGAGTTCATGGCTCTATGGGATGGATTCACTACCAACCAGAATGCCCGAATTATGGTACTTGCAGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGGCGTTTTCCTCAATCCTTTGAAATTGGACTTCCTGACCAGAAGGAAAGGGCTGATATATTGAAAATTATCTTAAAGGGTGAAAGGATTGAAGATAACATAGACCTCAATTATATAGCTAGCTTATGCGAGGGTTACACTGGTTCAGATCTATTTGATCTTTGTCAGAAGGCCGCCTATTTTTCTATTAGAGAACTGCTGGAATATGAGAAGAAAGGGAAACAATCTCCTGTACCTAGACGTTTGTCACAGTTAGATTTGGAGAAGACCCTTTCCACTTCACGGACAATGGTTGCTGCAAGTGAATACGATGGATTGAACCAACAGTCATCATCAAGACGGACATTTCCTGTTGATTCAGAGTAG 1089 0.4343 MKGSSERKYMQEFLLYAASAALSCLVLFTGLHYLDPSRESSKKALEHKKAIAKRLGRPLIHTDQYEDIIAGDVINPDHIDVEFDSIGGLESIKQTLFELVILPLKRPELFSHGKLLGPLKGVLLYGPPGTGKTMLAKAIARESGAVFINVRISNLMSKWFGDASKLVSAVFSLAYKLQPAIIFIDEVDSFLGQRRQSDHEALLNMKTEFMALWDGFTTNQNARIMVLAATNRPSELDEAILRRFPQSFEIGLPDQKERADILKIILKGERIEDNIDLNYIASLCEGYTGSDLFDLCQKAAYFSIRELLEYEKKGKQSPVPRRLSQLDLEKTLSTSRTMVAASEYDGLNQQSSSRRTFPVDSE 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02901 362 Gene3D - 253 333 - -
Vifa2g02901 362 MobiDBLite consensus disorder prediction 343 362 - -
Vifa2g02901 362 SMART AAA_5 118 254 IPR003593 GO:0016887
Vifa2g02901 362 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 12 343 - -
Vifa2g02901 362 Pfam AAA+ lid domain 274 309 IPR041569 -
Vifa2g02901 362 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Vifa2g02901 362 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Vifa2g02901 362 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Vifa2g02901 362 CDD RecA-like_ATAD1 85 250 - -
Vifa2g02901 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 313 IPR027417 -
Vifa2g02901 362 Gene3D - 80 343 IPR027417 -
Vifa2g02901 362 FunFam ATPase family AAA domain-containing protein 1 80 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02901 Vifa-Chr2 824064369 824069884 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02901 39 319 Calmodulin-binding Proteins AT3G56690 32.281 5.06e-39 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02901 K22530 - gmx:100796908 574.318