Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02900 ATGACTGGTTCACCCGATACGAAGTTCCTGCAAGAGCTGTTGTTGTACGCAGCTAGGGCGGCGCTGAGTTACTGGGTATTGGTCACGGGACTCAGATACCTTGACCCCAACCGTGAATCAACGAAGAAAGCTCTTGAACAAAAGAAACAGATTGCCAAGCGTCTAGGTCGCCCCCTCATTCAAACCAATCCATATGAGGATGTAATAGCCTGTGATGTTATAAACCCTGACCACATTGATGTTGAATTCGACTCCATTGGGGGACTCGAAACTATTAAACAAGCTCTGTTTGAGCTTGTTATTCTGCCCCTGAAACGCCCCGACTTGTTTTCCCATGGCAAGCTCCTTGGACCACAGAAGGGGGTTTTGTTGTATGGACCCCCTGGTACTGGGAAAACCATGCTTGCAAAAGCTATTGCCAAGGAGTCTGGAGCAGTGTTCATTAATGTCAAGATATCCAACCTCATGAGCAAATGGTTTGGGGATGCACAAAAGCTTGTGTCTGCCGTATTTAGCTTGGCTGATAAGCTTCAGCCTGCCATCATATTCATTGATGAAGTTGACAGTTTTTTGGGTCAACGTCGTTCATCAGATCACGAGGCTATGCTTAACATGAAAACTGAGTTCATGGCTCTATGGGACGGATTCACCACCAACAAGAATGCTCGAGTTATGGTACTTGCAGCAACTAATCGCCCTTCAGAACTTGACGAAGCAATACTCCGGCGACTTCCTCAAGCTTTTGAAATTGGATATCCAAACCGGAAAGAGAGGGCTGAGATATTGGCTGTTATCTTAAAGGGAGAAAGTATCGAAAACAACATAGATTTCAATCATATAGCGGGATTATGTAATGGTTACACTGGTTCAGATCTATTCGATCTTTGCAAGAAGGCTGCATATTTTCCTGTCAGAGAACTACTGGATAATGAGAAGAGAGGGAAACAAAGTCATGAACCTAGACCATTATCGCAGTTAGATTTGGAGAAGGCTGTTGCCACTTCACAGAAAACAACGGTTGCTGCAAATGAATACGATAGAATGAACCAACAGTCATCATCAAGACGGTCGTTTCCTGGTGAGAGTGATTTCGATGTTCAAGCTGCAATCAAGGAAATTTCTAAGCTTATGGGTTCTCACATGATTAACCTCCAAATAGATTCTCAGGATGCTTAA 1176 0.4405 MTGSPDTKFLQELLLYAARAALSYWVLVTGLRYLDPNRESTKKALEQKKQIAKRLGRPLIQTNPYEDVIACDVINPDHIDVEFDSIGGLETIKQALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVKISNLMSKWFGDAQKLVSAVFSLADKLQPAIIFIDEVDSFLGQRRSSDHEAMLNMKTEFMALWDGFTTNKNARVMVLAATNRPSELDEAILRRLPQAFEIGYPNRKERAEILAVILKGESIENNIDFNHIAGLCNGYTGSDLFDLCKKAAYFPVRELLDNEKRGKQSHEPRPLSQLDLEKAVATSQKTTVAANEYDRMNQQSSSRRSFPGESDFDVQAAIKEISKLMGSHMINLQIDSQDA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02900 391 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Vifa2g02900 391 Gene3D - 80 339 IPR027417 -
Vifa2g02900 391 SMART AAA_5 118 254 IPR003593 GO:0016887
Vifa2g02900 391 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Vifa2g02900 391 CDD RecA-like_ATAD1 85 250 - -
Vifa2g02900 391 Pfam AAA+ lid domain 274 309 IPR041569 -
Vifa2g02900 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 310 IPR027417 -
Vifa2g02900 391 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 30 351 - -
Vifa2g02900 391 Gene3D - 253 333 - -
Vifa2g02900 391 FunFam ATPase family AAA domain-containing protein 1 80 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02900 Vifa-Chr2 824041823 824048362 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02900 81 312 Calmodulin-binding Proteins AT3G56690 34.454 1.60e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02900 K22530 - gmx:100796908 630.557