Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02899 ATGGTTTGGATTTGGGCCAGTTCCATGACAATCTCTTCCATCTTCTTCATTTTGGCTCTCTCTTTCTTAATTTTCCGTTTCTTCCGTAAAACCTCTGCACTTCATATCCTGAAACGCTGGTGGCTTTCGTTTGAAAGCCGTCTTCATCTTCACCAATCCTTTAAAATTCCTTTATACGACCATAATTTCCGGGAAAATCAGCTTTACCGGAAAATCATTACTTACCTTGATTCATTACCTTCCGTTCAAGACTCTGATTTCACCAACCTCTTTTCCGGTGCTAATCCCTCTGATATCTTCCTCCATCTAGATGCTAACCAAATTGTTCATGATACTTTCTTAGGAGCTAAGCTTTCCTGGACCAACAACACCGTCGCCGGTGATTCTGCGTCAGCGCTCGTGCTTAGAATGAAAAAGAAAGATAAGCGTAGGGTTTTTCAGCAGTATTTCCAGCATATTCTCTCGGTTGCAGACGAAATTGAACAGCGAAGGAAGAAGGATATAAAACTGTTCATGAATTCCGGCTCCGGTGAAACACATCGGTGGCGTTCGGTTCCGTTTACGCATCCGGCAAGCTTCGAAACGGTGGCGATGGATGTAGAATTGAAAAACAAGGTTAAAACAGATCTGGATCAGTTTCTGAAATCTAAACAGTACTACAACAGATTAGGCCGTGTTTGGAAGAGGAGTTACCTTCTCTACGGTGCATCCGGTACCGGAAAATCAAGTTTCGTAGCTGCTATGGCGAAGTTTCTCTGCTACGACGTTTACGATATCGACGTTTCCAAGGTGGTGGAGGGTTCAGATTGGAAAACGCTGTTGATGCAAACGACGCCGAAGTCGATGATCTTAATCGAGGATCTGGATCGTTTATTAGCGGGAAAATCAACGGCTGTTAATTTATCAAGTGTGTTGAACTTCATGGATGGGATAATGAGTTGTTGCGGTGAAGAGCGTGTGATGGTTTTCACGATGAACGGTACGAAAGATGAAGTTGATCAAGCGGTGTTGAGACCTGGGAGAGTTGATGTTCACATACACTTCCCCTTATGTGATTTCTCCACCTTTAAGATTCTGGCTAATAGTTATTTAGGGTTGAAGGAGCACAAGCTTTTCCCTCAAGTGGAAGAGGTTTTTCAGACCGGTGCGTGGCTCAGCCCGGCGGAAATCGGTGAGATTATGATATCCAACCGGAATTCGCCGAGTAGGGCCTTAAAAACGGTTATAACCGCTATGCAGGTGCAATCCAATGGTCAGGGGCAGAGGTTGAGTAATAGTGGGTCGGGTCGGAGCTCCGAAGAGGTTAGTGATGCAAATGGTGTGATATGTAGAGAGAGTGTTCATACGGTGAGGGAGTTTAGGAAGCTGTATGGGCTTTTGCGTTTGGGAAGTAGGAGGAAGGAGGAGTCTGGTTATTCGGGTCCCATACAGAAAGAACCGCCGCGCATCGAGGGTCGGGTCGGATAA 1467 0.454 MVWIWASSMTISSIFFILALSFLIFRFFRKTSALHILKRWWLSFESRLHLHQSFKIPLYDHNFRENQLYRKIITYLDSLPSVQDSDFTNLFSGANPSDIFLHLDANQIVHDTFLGAKLSWTNNTVAGDSASALVLRMKKKDKRRVFQQYFQHILSVADEIEQRRKKDIKLFMNSGSGETHRWRSVPFTHPASFETVAMDVELKNKVKTDLDQFLKSKQYYNRLGRVWKRSYLLYGASGTGKSSFVAAMAKFLCYDVYDIDVSKVVEGSDWKTLLMQTTPKSMILIEDLDRLLAGKSTAVNLSSVLNFMDGIMSCCGEERVMVFTMNGTKDEVDQAVLRPGRVDVHIHFPLCDFSTFKILANSYLGLKEHKLFPQVEEVFQTGAWLSPAEIGEIMISNRNSPSRALKTVITAMQVQSNGQGQRLSNSGSGRSSEEVSDANGVICRESVHTVREFRKLYGLLRLGSRRKEESGYSGPIQKEPPRIEGRVG 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02899 488 Gene3D - 183 350 IPR027417 -
Vifa2g02899 488 PANTHER BCS1 AAA-TYPE ATPASE 47 413 - -
Vifa2g02899 488 SMART AAA_5 227 352 IPR003593 GO:0016887
Vifa2g02899 488 MobiDBLite consensus disorder prediction 468 488 - -
Vifa2g02899 488 MobiDBLite consensus disorder prediction 416 435 - -
Vifa2g02899 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 412 IPR027417 -
Vifa2g02899 488 Pfam ATPase family associated with various cellular activities (AAA) 232 350 IPR003959 GO:0005524|GO:0016887
Vifa2g02899 488 Pfam Domain associated at C-terminal with AAA 34 122 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02899 Vifa-Chr2 823499205 823500671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02899 223 348 Calmodulin-binding Proteins AT3G56690 25.532 6.92e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02899 - K08900 gmx:100797983 755.362